Metamenu

Effective results for Erwinia amylovora CFBP1430 (eggnog40)

Summary

Number of putative secreted proteins: 506
- Predicted by EffectiveT3: 178 (high confidence), 259 (low confidence)
- Predicted by EffectiveCCBD: 19 within, 16 before, 31 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 21 proteins (3 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
665029.EAMY_0820+PF17177 PF13812(plastid)
665029.EAMY_2701(>)(PF00771)mitochondrial
665029.EAMY_0779(PF00771)ER
665029.EAMY_3632(<)(ER)
665029.EAMY_1350+(ER)
665029.EAMY_1602(<)ER
665029.EAMY_3280(>)mitochondrial
665029.EAMY_1580(PF00771)(ER)
665029.EAMY_2128(>)ER; (ER)
665029.EAMY_3295(>)ER
665029.EAMY_2910(>)ER
665029.EAMY_2659+(mitochondrial)
665029.EAMY_2457+ER
665029.EAMY_0680(PF13332)mitochondrial
665029.EAMY_1280+ER; (ER)
665029.EAMY_3654+(mitochondrial); (plastid)
665029.EAMY_3328+(mitochondrial)
665029.EAMY_3321+ER; (plastid)
665029.EAMY_0534(PF00771)ER
665029.EAMY_1462+(mitochondrial); (plastid)
665029.EAMY_2022(>)ER
665029.EAMY_2315+(mitochondrial)
665029.EAMY_2084(PF00771)(ER); (mitochondrial)
665029.EAMY_0492(PF05023)ER
665029.EAMY_0077+(mitochondrial)
665029.EAMY_1858(>)ER
665029.EAMY_0662(>)ER
665029.EAMY_1746(>)mitochondrial; (mitochondrial)
665029.EAMY_3572(>)ER
665029.EAMY_2673(+)+(mitochondrial)
665029.EAMY_2675+(mitochondrial); plastid
665029.EAMY_3270(>)ER
665029.EAMY_1880+ER
665029.EAMY_0924+mitochondrial; (mitochondrial)
665029.EAMY_1433(>)ER
665029.EAMY_1408+(mitochondrial); (plastid)
665029.EAMY_2451(>)ER
665029.EAMY_1979(<)mitochondrial; ER
665029.EAMY_2392+ER; (ER)
665029.EAMY_2863(<)mitochondrial
665029.EAMY_2005+ER
665029.EAMY_2493+ER; (ER)
665029.EAMY_2813(+)(mitochondrial); plastid
665029.EAMY_3526(+)(mitochondrial)
665029.EAMY_3525+plastid
665029.EAMY_0889(+)(>)(plastid)
665029.EAMY_3192+(PF02844)
665029.EAMY_1292(+)mitochondrial
665029.EAMY_1542+plastid
665029.EAMY_1839(+)(mitochondrial)
665029.EAMY_0199(+)ER
665029.EAMY_1117(+)(ER)
665029.EAMY_1330+(mitochondrial)
665029.EAMY_3663(+)(PF00102)(plastid)
665029.EAMY_0030+(plastid)
665029.EAMY_3071(+)(mitochondrial)
665029.EAMY_3411+(>)
665029.EAMY_1797(+)(mitochondrial); plastid
665029.EAMY_1792+(mitochondrial); not used
665029.EAMY_1484(+)ER
665029.EAMY_2663(+)(mitochondrial)
665029.EAMY_0010+(plastid)
665029.EAMY_0653+(mitochondrial)
665029.EAMY_1781(+)ER
665029.EAMY_0007+(plastid)
665029.EAMY_0647(+)(mitochondrial)
665029.EAMY_2462(+)ER
665029.EAMY_2646+(plastid)
665029.EAMY_3133+(mitochondrial)
665029.EAMY_3659+(mitochondrial)
665029.EAMY_2143(+)+(ER)
665029.EAMY_1213(<)(mitochondrial)
665029.EAMY_3235+PF06597
665029.EAMY_2408(+)(mitochondrial)
665029.EAMY_2247(<)(plastid)
665029.EAMY_1455+(plastid)
665029.EAMY_1458(+)(mitochondrial)
665029.EAMY_2503(<)(mitochondrial)
665029.EAMY_2183+(mitochondrial)
665029.EAMY_2215(+)mitochondrial; (mitochondrial)
665029.EAMY_3621+(plastid)
665029.EAMY_0261(PF02844)(mitochondrial)
665029.EAMY_0734(+)(mitochondrial)
665029.EAMY_3272+(mitochondrial)
665029.EAMY_2076(+)+(plastid)
665029.EAMY_0933(+)ER
665029.EAMY_1405+(<)
665029.EAMY_2570+(PF16485)
665029.EAMY_2867+(plastid)
665029.EAMY_2175(+)(mitochondrial)
665029.EAMY_0432(+)(mitochondrial)
665029.EAMY_0542+plastid
665029.EAMY_0898(+)mitochondrial; (mitochondrial)
665029.EAMY_1506+plastid
665029.EAMY_1384(+)(ER)
665029.EAMY_2141+plastid
665029.EAMY_2728+
665029.EAMY_3141+
665029.EAMY_3031(+)(ER)
665029.EAMY_0955(>)
665029.EAMY_0270+
665029.EAMY_0556+
665029.EAMY_0554+
665029.EAMY_0373(+)(plastid)
665029.EAMY_0372(>)
665029.EAMY_0778+
665029.EAMY_0775+
665029.EAMY_0770+
665029.EAMY_1284+
665029.EAMY_1776+not used
665029.EAMY_1779(PF14328)
665029.EAMY_1509+
665029.EAMY_2155+
665029.EAMY_1590(PF07720)
665029.EAMY_2158+
665029.EAMY_1594(+)(>)
665029.EAMY_1595+
665029.EAMY_2030+
665029.EAMY_2935+
665029.EAMY_3283+
665029.EAMY_3040+
665029.EAMY_3514+
665029.EAMY_3463(<)
665029.EAMY_0561+
665029.EAMY_0348(<)
665029.EAMY_0185+
665029.EAMY_0548+
665029.EAMY_1168+
665029.EAMY_1296+
665029.EAMY_1767+
665029.EAMY_1762(+)(ER)
665029.EAMY_1610+
665029.EAMY_1834+
665029.EAMY_2585+
665029.EAMY_2582+
665029.EAMY_2580+
665029.EAMY_2234+
665029.EAMY_2237+
665029.EAMY_3293+not used
665029.EAMY_3473(+)(plastid)
665029.EAMY_0400+
665029.EAMY_0883+
665029.EAMY_0757+
665029.EAMY_2846+not used
665029.EAMY_2771+
665029.EAMY_1802+
665029.EAMY_1808(+)(mitochondrial)
665029.EAMY_2913(+)(mitochondrial)
665029.EAMY_2829+
665029.EAMY_3262+
665029.EAMY_0696(<)
665029.EAMY_3314+
665029.EAMY_0503+
665029.EAMY_0320+
665029.EAMY_1987(+)(mitochondrial)
665029.EAMY_1105+
665029.EAMY_2697(<)
665029.EAMY_2695+
665029.EAMY_3672+
665029.EAMY_1819(>)
665029.EAMY_2850+
665029.EAMY_3275+
665029.EAMY_2074(+)plastid
665029.EAMY_3099+
665029.EAMY_2344+not used
665029.EAMY_0688(+)(mitochondrial)
665029.EAMY_3309+
665029.EAMY_0519+
665029.EAMY_0204(+)mitochondrial; not used
665029.EAMY_2048+
665029.EAMY_2685+
665029.EAMY_1795(<)
665029.EAMY_2041+not used
665029.EAMY_1480+
665029.EAMY_2113+
665029.EAMY_1266+not used
665029.EAMY_2203+
665029.EAMY_2204+
665029.EAMY_2960+
665029.EAMY_0158(+)(mitochondrial)
665029.EAMY_2843+
665029.EAMY_2842+not used
665029.EAMY_2069+
665029.EAMY_3335+
665029.EAMY_0789(PF07720)
665029.EAMY_0657+not used
665029.EAMY_1785+
665029.EAMY_2477+
665029.EAMY_3653+
665029.EAMY_1870+
665029.EAMY_1270+
665029.EAMY_0466+
665029.EAMY_0264+
665029.EAMY_2329+
665029.EAMY_3324(+)(plastid)
665029.EAMY_0791+
665029.EAMY_0795+
665029.EAMY_0797+
665029.EAMY_0003+
665029.EAMY_0643+not used
665029.EAMY_0642+
665029.EAMY_0313+not used
665029.EAMY_3193(>)
665029.EAMY_1463+
665029.EAMY_2797+
665029.EAMY_2792+
665029.EAMY_2799+
665029.EAMY_1202+
665029.EAMY_2666+
665029.EAMY_3226(+)(mitochondrial)
665029.EAMY_3220+
665029.EAMY_3228+
665029.EAMY_3685(+)(mitochondrial)
665029.EAMY_3355+
665029.EAMY_3356+
665029.EAMY_0819(+)+
665029.EAMY_0677(PF13332)
665029.EAMY_0673(+)(PF13332)
665029.EAMY_0671(PF13332)
665029.EAMY_2416+
665029.EAMY_1379+
665029.EAMY_1674+
665029.EAMY_1502+
665029.EAMY_2636+not used
665029.EAMY_3237(+)(mitochondrial); not used
665029.EAMY_3234PF06597
665029.EAMY_3232+
665029.EAMY_3238+
665029.EAMY_3698(>)
665029.EAMY_2221(+)(plastid)
665029.EAMY_3345+
665029.EAMY_0563+
665029.EAMY_0484+
665029.EAMY_2301(+)(ER)
665029.EAMY_1041+
665029.EAMY_2407+
665029.EAMY_1190+
665029.EAMY_2306(+)(plastid)
665029.EAMY_2624(>)
665029.EAMY_3538+
665029.EAMY_3539+
665029.EAMY_3115+
665029.EAMY_0876+
665029.EAMY_0870+
665029.EAMY_0873+
665029.EAMY_3574+
665029.EAMY_1738+
665029.EAMY_0471+
665029.EAMY_0472+
665029.EAMY_1451+
665029.EAMY_1456(+)(plastid)
665029.EAMY_0792+
665029.EAMY_2968+
665029.EAMY_0591+
665029.EAMY_0469(>)
665029.EAMY_0046+not used
665029.EAMY_2517+
665029.EAMY_1083+not used
665029.EAMY_1952(<)
665029.EAMY_2194(>)
665029.EAMY_2196(>)
665029.EAMY_3175+
665029.EAMY_3171(+)(plastid)
665029.EAMY_0857(+)(mitochondrial)
665029.EAMY_3553+not used
665029.EAMY_1576+
665029.EAMY_0161+
665029.EAMY_2567+
665029.EAMY_2562(>)
665029.EAMY_2569(+)(plastid)
665029.EAMY_1097+
665029.EAMY_2161+
665029.EAMY_3162+
665029.EAMY_0845+
665029.EAMY_0844+
665029.EAMY_0841(+)(plastid)
665029.EAMY_3012+
665029.EAMY_3011+
665029.EAMY_3540(+)(>)
665029.EAMY_1400(+)(plastid)
665029.EAMY_1404+
665029.EAMY_2573+not used
665029.EAMY_2173+
665029.EAMY_3055(+)(mitochondrial)
665029.EAMY_2379+
665029.EAMY_3500+
665029.EAMY_3155+
665029.EAMY_2714+
665029.EAMY_2726+
665029.EAMY_2000+
665029.EAMY_2004+
665029.EAMY_0349+
665029.EAMY_0942+
665029.EAMY_3443(<)
665029.EAMY_0543+
665029.EAMY_0768+
665029.EAMY_0166(>)
665029.EAMY_1387+
665029.EAMY_1419(+)(PF05225)
665029.EAMY_3626(>)
665029.EAMY_3703(<)
665029.EAMY_3708(>)
665029.EAMY_1369+
665029.EAMY_1565+
665029.EAMY_2817(+)
665029.EAMY_3140(+)
665029.EAMY_2927(+)
665029.EAMY_0558(+)
665029.EAMY_0080(+)
665029.EAMY_2721(+)
665029.EAMY_2886(+)
665029.EAMY_1285(+)
665029.EAMY_2552(+)
665029.EAMY_0761(+)
665029.EAMY_1917(+)
665029.EAMY_1913(+)
665029.EAMY_3603(+)
665029.EAMY_3601(+)
665029.EAMY_3513(+)
665029.EAMY_0966(+)
665029.EAMY_1724(+)not used
665029.EAMY_0340(+)
665029.EAMY_1298(+)
665029.EAMY_3611(+)
665029.EAMY_3614(+)not used
665029.EAMY_1831(+)
665029.EAMY_2584(+)not used
665029.EAMY_2906(+)
665029.EAMY_0974(+)
665029.EAMY_0973(+)
665029.EAMY_0754(+)
665029.EAMY_1628(+)
665029.EAMY_2593(+)
665029.EAMY_2592(+)
665029.EAMY_1755(+)
665029.EAMY_2823(+)not used
665029.EAMY_3062(+)not used
665029.EAMY_3061(+)not used
665029.EAMY_2596(+)
665029.EAMY_3083(+)
665029.EAMY_0693(+)
665029.EAMY_3546(+)
665029.EAMY_3316(+)
665029.EAMY_3317(+)
665029.EAMY_0502(+)
665029.EAMY_0033(+)
665029.EAMY_1984(+)not used
665029.EAMY_2500(+)not used
665029.EAMY_2692(+)
665029.EAMY_2694(+)
665029.EAMY_1254(+)
665029.EAMY_2854(+)not used
665029.EAMY_2851(+)
665029.EAMY_3273(+)
665029.EAMY_3075(+)
665029.EAMY_2348(+)
665029.EAMY_2349(+)
665029.EAMY_0023(+)
665029.EAMY_1135(+)
665029.EAMY_2686(+)
665029.EAMY_3642(+)
665029.EAMY_3640(+)
665029.EAMY_1860(+)not used
665029.EAMY_1262(+)
665029.EAMY_0302(+)
665029.EAMY_0536(+)
665029.EAMY_0521(+)
665029.EAMY_0547(+)
665029.EAMY_0017(+)not used
665029.EAMY_1127(+)
665029.EAMY_1126(+)
665029.EAMY_1015(+)
665029.EAMY_2785(+)
665029.EAMY_1279(+)
665029.EAMY_2639(+)
665029.EAMY_3323(+)
665029.EAMY_0823(+)
665029.EAMY_0531(+)
665029.EAMY_0799(+)not used
665029.EAMY_0221(+)
665029.EAMY_1067(+)not used
665029.EAMY_1068(+)
665029.EAMY_1151(+)
665029.EAMY_1153(+)
665029.EAMY_2467(+)not used
665029.EAMY_1461(+)
665029.EAMY_1662(+)
665029.EAMY_1686(+)
665029.EAMY_1689(+)
665029.EAMY_1205(+)
665029.EAMY_2269(+)
665029.EAMY_1512(+)
665029.EAMY_1846(+)
665029.EAMY_1516(+)not used
665029.EAMY_2882(+)
665029.EAMY_3689(+)not used
665029.EAMY_0676(+)
665029.EAMY_0675(+)
665029.EAMY_0100(+)
665029.EAMY_0103(+)
665029.EAMY_1675(+)
665029.EAMY_3025(+)
665029.EAMY_1575(+)
665029.EAMY_3236(+)not used
665029.EAMY_3341(+)not used
665029.EAMY_0241(+)
665029.EAMY_0666(+)not used
665029.EAMY_2300(+)
665029.EAMY_0113(+)
665029.EAMY_3251(+)
665029.EAMY_3249(+)
665029.EAMY_2409(+)
665029.EAMY_1996(+)
665029.EAMY_2249(+)
665029.EAMY_2330(+)
665029.EAMY_3206(+)
665029.EAMY_0747(+)
665029.EAMY_3110(+)
665029.EAMY_3020(+)
665029.EAMY_3372(+)
665029.EAMY_0584(+)not used
665029.EAMY_0583(+)
665029.EAMY_1630(+)
665029.EAMY_0126(+)
665029.EAMY_0056(+)
665029.EAMY_2435(+)not used
665029.EAMY_1188(+)
665029.EAMY_1457(+)
665029.EAMY_1237(+)
665029.EAMY_2298(+)
665029.EAMY_3211(+)
665029.EAMY_2763(+)
665029.EAMY_3361(+)
665029.EAMY_3485(+)
665029.EAMY_0461(+)not used
665029.EAMY_0918(+)
665029.EAMY_0910(+)
665029.EAMY_3690(+)
665029.EAMY_0139(+)
665029.EAMY_0134(+)
665029.EAMY_2421(+)
665029.EAMY_1421(+)
665029.EAMY_2511(+)not used
665029.EAMY_2475(+)
665029.EAMY_2289(+)
665029.EAMY_2197(+)
665029.EAMY_1886(+)
665029.EAMY_0315(+)
665029.EAMY_0640(+)
665029.EAMY_2774(+)
665029.EAMY_2973(+)
665029.EAMY_0859(+)not used
665029.EAMY_2975(+)
665029.EAMY_1023(+)
665029.EAMY_3394(+)
665029.EAMY_0921(+)
665029.EAMY_0147(+)
665029.EAMY_0141(+)
665029.EAMY_0143(+)
665029.EAMY_1345(+)
665029.EAMY_1229(+)not used
665029.EAMY_1547(+)
665029.EAMY_1949(+)
665029.EAMY_1898(+)
665029.EAMY_3494(+)
665029.EAMY_2385(+)
665029.EAMY_3167(+)
665029.EAMY_3163(+)not used
665029.EAMY_0847(+)
665029.EAMY_0842(+)
665029.EAMY_2014(+)
665029.EAMY_2626(+)
665029.EAMY_3380(+)
665029.EAMY_0445(+)
665029.EAMY_2605(+)not used
665029.EAMY_0626(+)
665029.EAMY_0623(+)
665029.EAMY_3205(+)not used
665029.EAMY_2459(+)
665029.EAMY_0154(+)
665029.EAMY_2992(+)
665029.EAMY_1141(+)
665029.EAMY_1392(+)
665029.EAMY_1394(+)
665029.EAMY_2574(+)
665029.EAMY_1712(+)
665029.EAMY_3298(+)
665029.EAMY_1977(+)
665029.EAMY_1975(+)
665029.EAMY_2174(+)not used
665029.EAMY_2378(+)
665029.EAMY_2370(+)
665029.EAMY_2862(+)
665029.EAMY_2046(+)
665029.EAMY_0430(+)
665029.EAMY_3188(+)not used
665029.EAMY_0541(+)
665029.EAMY_0389(+)
665029.EAMY_0386(+)
665029.EAMY_0385(+)
665029.EAMY_0369(+)
665029.EAMY_1380(+)
665029.EAMY_3704(+)
665029.EAMY_1362(+)
665029.EAMY_2490(+)
665029.EAMY_1569(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 3.1 (31/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================