Effective results for Thermodesulfatator indicus DSM 15286 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 50 proteins (2 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
667014.Thein_0858				(PF01535)	ER
667014.Thein_1070				(PF03266)	mitochondrial
667014.Thein_1741				(PF14885)	ER
667014.Thein_1843				PF07998	ER
667014.Thein_2014				(PF10143)	ER
667014.Thein_1214				(PF00731)	(mitochondrial)
667014.Thein_2222				(PF00037)	ER
667014.Thein_0748				(PF00037)	(ER)
667014.Thein_1323				(PF01875)	(mitochondrial)
667014.Thein_2043				(PF00037)	(plastid)
667014.Thein_2107				(PF00037)
667014.Thein_2112				PF07998
667014.Thein_0426				(PF02371)
667014.Thein_0857				(PF02371)
667014.Thein_0679				(PF02371)
667014.Thein_0840				(PF02527)
667014.Thein_1824				(PF00037)
667014.Thein_1624				(PF00037)
667014.Thein_1535				(PF00684)
667014.Thein_0472				(PF00731)
667014.Thein_0495				(PF02256)
667014.Thein_0497				(PF02256)
667014.Thein_0498				(PF00037)
667014.Thein_0009				(PF00684)
667014.Thein_0468				(PF00037)
667014.Thein_0469				(PF00037)
667014.Thein_0803				(PF01875)
667014.Thein_2069				(PF00037)
667014.Thein_0245				(PF11969)
667014.Thein_1195				(PF02527)
667014.Thein_0346				(PF00684)
667014.Thein_0234				(PF02371)
667014.Thein_1366				(PF02256)
667014.Thein_1749				(PF02371)
667014.Thein_2044				(PF00037)
667014.Thein_0911				(PF02371)
667014.Thein_0778				(PF05189)
667014.Thein_0717				(PF02371)
667014.Thein_0781				(PF02371)
667014.Thein_1764				(PF02371)
667014.Thein_0045				(PF00731)
667014.Thein_0200				(PF10143)
667014.Thein_2233				(PF02371)
667014.Thein_0306				(PF00037)
667014.Thein_0099				(PF02371)
667014.Thein_2175				(PF02371)
667014.Thein_0408				(PF00025)
667014.Thein_0404				(PF00037)
667014.Thein_0082				(PF02371)
667014.Thein_1040				(PF00037)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================