Effective results for Rhodococcus equi 103S (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 109 proteins (2 high, 107 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
685727.REQ_01690				(PF03007) (PF06974)	(ER)
685727.REQ_15690				(PF00756)	ER
685727.REQ_40930				(PF13810)	(mitochondrial)
685727.REQ_39990				(PF01674)	ER
685727.REQ_43790				(PF00756)	mitochondrial; (mitochondrial)
685727.REQ_12940				(PF00756)	(mitochondrial)
685727.REQ_03650				(PF00909)	(ER); ER
685727.REQ_32410				(PF03583)	ER
685727.REQ_08890				(PF00756)	mitochondrial; (mitochondrial)
685727.REQ_24180				(PF00756)	ER; (ER)
685727.REQ_39250				(PF00756)	ER
685727.REQ_47040				(PF03583)	(ER)
685727.REQ_37900				(PF03583)	ER
685727.REQ_23870				(PF03583)	ER
685727.REQ_34590				(PF00756)	ER; (ER)
685727.REQ_10520				(PF03583)	ER
685727.REQ_02430				(PF01469)	(ER)
685727.REQ_01990				(PF00756)	ER
685727.REQ_20060				PF13886	ER
685727.REQ_00150				(PF03583)	ER
685727.REQ_35930				(PF01674)	ER
685727.REQ_32810				(PF00756)	mitochondrial
685727.REQ_06850				(PF17048)	mitochondrial
685727.REQ_47190				(PF13810)	ER; mitochondrial
685727.REQ_28061				(PF14494)	ER; (ER)
685727.REQ_38570				(PF00756)	ER
685727.REQ_42760				(PF00909)	ER
685727.REQ_27110				(PF03583)	(ER); (plastid)
685727.REQ_09940				(PF00756)	mitochondrial; (mitochondrial)
685727.REQ_39560				(PF00909)	ER
685727.REQ_20840				(PF00756)	ER
685727.REQ_18250				(PF03583)	ER
685727.REQ_29980				(PF03583)	(ER); ER
685727.REQ_12970				(PF06974) (PF03007)
685727.REQ_33280				(PF06974) (PF03007)
685727.REQ_29020				(PF03007) (PF06974)
685727.REQ_20560				(PF06974) (PF03007)
685727.REQ_40870				(PF03007) (PF06974)
685727.REQ_30820				(PF08354) PF16073
685727.REQ_16790				(PF03007) (PF06974)
685727.REQ_44660				(PF06974) (PF03007)
685727.REQ_00530				(PF00890)	(ER)
685727.REQ_46010				(PF00743)
685727.REQ_10840				(PF13452)
685727.REQ_40940				(PF13577)
685727.REQ_08850				(PF00890)
685727.REQ_02000				(PF00756)
685727.REQ_30360				(PF03583)
685727.REQ_43600				(PF13577)
685727.REQ_12140				(PF13577)
685727.REQ_44130				(PF13577)
685727.REQ_44350				(PF00890)
685727.REQ_37890				(PF14249)
685727.REQ_00890				(PF13452)
685727.REQ_34750				(PF00743)
685727.REQ_43550				(PF13452)
685727.REQ_43820				(PF00890)
685727.REQ_18130				(PF13452)
685727.REQ_30490				(PF01674)
685727.REQ_13730				(PF00890)
685727.REQ_45740				(PF16952)
685727.REQ_43760				(PF13577)
685727.REQ_13940				(PF00890)
685727.REQ_44110				(PF13577)
685727.REQ_36890				(PF13452)
685727.REQ_21780				(PF01674)
685727.REQ_00780				(PF00743)
685727.REQ_13290				(PF04505)
685727.REQ_30930				(PF00909)
685727.REQ_03020				(PF00743)
685727.REQ_06540				(PF13452)
685727.REQ_06940				(PF13577)
685727.REQ_35370				(PF07224)
685727.REQ_03470				(PF00756)
685727.REQ_45280				(PF00743)
685727.REQ_26570				(PF13577)
685727.REQ_26970				(PF00890)
685727.REQ_27170				(PF00890)
685727.REQ_12200				(PF13577)
685727.REQ_13080				(PF00890)
685727.REQ_06740				(PF04505)
685727.REQ_27380				(PF00909)
685727.REQ_06770				(PF00890)
685727.REQ_30200				(PF00890)
685727.REQ_14690				(PF00743)
685727.REQ_06760				(PF13452)
685727.REQ_44140				(PF13577)
685727.REQ_10320				(PF00890)
685727.REQ_15820				(PF00890)
685727.REQ_19101				(PF13577)
685727.REQ_44190				(PF00743)
685727.REQ_40030				(PF13577)
685727.REQ_43670				(PF13452)
685727.REQ_42620				(PF13452)
685727.REQ_43870				(PF13577)
685727.REQ_12430				(PF00890)
685727.REQ_08000				(PF02544)
685727.REQ_44380				(PF13577)
685727.REQ_07930				(PF00890)
685727.REQ_43510				(PF13452)
685727.REQ_02570				(PF00756)
685727.REQ_39960				(PF00743)
685727.REQ_30500				(PF13810)
685727.REQ_30290				(PF13452)
685727.REQ_34330				(PF00890)
685727.REQ_44330				(PF13577)
685727.REQ_13010				(PF00743)
685727.REQ_00180				(PF00643)
685727.REQ_43440				(PF13452)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================