Metamenu

Effective results for Aggregatibacter actinomycetemcomitans D7S-1 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 24 proteins (1 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
694569.D7S_1182(PF03222)(ER)
694569.D7S_0585(PF03222)ER
694569.D7S_0242(PF00939)ER
694569.D7S_1581(PF00939)ER
694569.D7S_0793(PF03222)ER
694569.D7S_2036(PF03222)(ER)
694569.D7S_1940(PF03222)(ER)
694569.D7S_1113(PF04127)(ER)
694569.D7S_1778(PF00939)(ER)
694569.D7S_2034(PF10063)
694569.D7S_1430(PF05990)
694569.D7S_0111(PF00939)
694569.D7S_2252(PF01755)
694569.D7S_1101(PF05704)
694569.D7S_1100PF09612
694569.D7S_1102(PF01755)
694569.D7S_1104(PF01755)
694569.D7S_1743(PF00562)
694569.D7S_1744(PF00562)
694569.D7S_0990(PF00939)
694569.D7S_1115(PF04127)
694569.D7S_1757(PF05990)
694569.D7S_0753(PF05990)
694569.D7S_0817(PF05990)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

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EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
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