Effective results for Enterobacter lignolyticus SCF1 (eggnog40)

Summary

Number of putative secreted proteins: 601
- Predicted by EffectiveT3: 148 (high confidence), 241 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 26 before, 37 behind expected region 25..70aa
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 66 proteins (1 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
701347.Entcl_2723(>)PF05512mitochondrial
701347.Entcl_2241++ER
701347.Entcl_1063++(mitochondrial)
701347.Entcl_0576+(PF11380)mitochondrial; (mitochondrial)
701347.Entcl_3119(>)ER
701347.Entcl_3115(PF00854)ER
701347.Entcl_4289(PF01228) (PF02901)(mitochondrial)
701347.Entcl_0295(>)ER
701347.Entcl_0909+ER
701347.Entcl_0635(PF00345)ER
701347.Entcl_0069+(ER); ER
701347.Entcl_0914+ER; (ER)
701347.Entcl_1888(PF03222)ER
701347.Entcl_2063+ER; (ER)
701347.Entcl_3001+mitochondrial; (mitochondrial)
701347.Entcl_3390+(mitochondrial)
701347.Entcl_2710+(mitochondrial); (plastid)
701347.Entcl_3536+(mitochondrial); mitochondrial
701347.Entcl_0723+ER
701347.Entcl_3914(>)ER
701347.Entcl_1382(>)mitochondrial
701347.Entcl_2276(PF00345)ER
701347.Entcl_2871+(ER)
701347.Entcl_4098+ER
701347.Entcl_1064(PF00345)ER
701347.Entcl_1608+ER
701347.Entcl_1604(PF00577)ER
701347.Entcl_1606(PF00345)ER
701347.Entcl_1603(PF00345)ER
701347.Entcl_2390(PF03222)(ER)
701347.Entcl_2464(<)ER
701347.Entcl_3023(PF00345)ER
701347.Entcl_3024(PF00577)(mitochondrial); mitochondrial
701347.Entcl_4426(PF00345)ER
701347.Entcl_4427(PF00577)ER
701347.Entcl_3282(PF00345)ER
701347.Entcl_3281(PF00577)ER; (ER)
701347.Entcl_4082(>)ER
701347.Entcl_0128(PF05704)(mitochondrial)
701347.Entcl_2652+(mitochondrial)
701347.Entcl_0896(<)(ER)
701347.Entcl_2815+ER
701347.Entcl_1296(<)ER
701347.Entcl_2254+ER
701347.Entcl_0630(PF00345)ER
701347.Entcl_0711(PF00345)ER
701347.Entcl_0712(PF00577)(ER); ER
701347.Entcl_0882(PF03222)(ER)
701347.Entcl_0889+(mitochondrial); plastid
701347.Entcl_1963(>)ER
701347.Entcl_3194+mitochondrial
701347.Entcl_2023+(ER)
701347.Entcl_2750(PF00577)ER
701347.Entcl_2751(PF00345)ER
701347.Entcl_4199+ER
701347.Entcl_0475(>)ER
701347.Entcl_1909+(mitochondrial); plastid
701347.Entcl_2766+ER
701347.Entcl_3360+mitochondrial
701347.Entcl_3740(PF11380)(mitochondrial)
701347.Entcl_1741(PF10662)mitochondrial
701347.Entcl_2822(>)ER; (ER)
701347.Entcl_1330+ER
701347.Entcl_3881(>)(ER)
701347.Entcl_2570(PF03711)(ER)
701347.Entcl_3081+ER
701347.Entcl_2682(PF00345)ER
701347.Entcl_3384+ER
701347.Entcl_1494(>)mitochondrial
701347.Entcl_1816+(ER)
701347.Entcl_2365+mitochondrial
701347.Entcl_2547+ER
701347.Entcl_3940+ER
701347.Entcl_3437(>)ER
701347.Entcl_0536(PF03222)ER; (ER)
701347.Entcl_0155+(mitochondrial)
701347.Entcl_2156(PF00345)ER
701347.Entcl_2157(PF00577)mitochondrial; (mitochondrial)
701347.Entcl_3848+(ER); ER
701347.Entcl_3449+ER
701347.Entcl_3441+(ER)
701347.Entcl_0320+ER
701347.Entcl_4000+(mitochondrial)
701347.Entcl_0237(PF00854)(ER)
701347.Entcl_1962+ER
701347.Entcl_3857(PF00577)ER
701347.Entcl_3858(PF00345)(ER)
701347.Entcl_0228(PF00345)ER
701347.Entcl_0225(PF00345)ER
701347.Entcl_0227(PF00577)ER
701347.Entcl_0180(<)ER; (ER)
701347.Entcl_0171+ER
701347.Entcl_1195(PF00854)ER
701347.Entcl_2404+mitochondrial; (mitochondrial)
701347.Entcl_3261(>)(ER)
701347.Entcl_3351(>)ER
701347.Entcl_3093+ER
701347.Entcl_0964+ER
701347.Entcl_0767+mitochondrial; (mitochondrial)
701347.Entcl_1189+ER
701347.Entcl_1986+ER
701347.Entcl_2617+ER
701347.Entcl_3670(<)ER
701347.Entcl_0776(>)(mitochondrial)
701347.Entcl_0111+(mitochondrial)
701347.Entcl_4043(PF01228) (PF02901)
701347.Entcl_4049+(plastid)
701347.Entcl_1347+plastid
701347.Entcl_2880(PF01228) (PF02901)
701347.Entcl_1409+(mitochondrial)
701347.Entcl_2845(+)ER
701347.Entcl_3719+(ER)
701347.Entcl_0383+(mitochondrial)
701347.Entcl_1870(+)(mitochondrial); (plastid)
701347.Entcl_2013(+)(mitochondrial); plastid
701347.Entcl_3385+
701347.Entcl_4094(>)(mitochondrial)
701347.Entcl_3773(+)ER
701347.Entcl_2480+(ER)
701347.Entcl_3355+(mitochondrial)
701347.Entcl_3519(PF03711) (PF01276)
701347.Entcl_4175(+)ER
701347.Entcl_0417+(mitochondrial)
701347.Entcl_3830(+)(ER)
701347.Entcl_0631(PF00577)(ER)
701347.Entcl_0668(+)(mitochondrial); (plastid)
701347.Entcl_2172+(mitochondrial)
701347.Entcl_3972++
701347.Entcl_0763+(<)
701347.Entcl_0764(+)ER
701347.Entcl_1046+(plastid)
701347.Entcl_0197(+)ER
701347.Entcl_0191+(mitochondrial)
701347.Entcl_0931(+)(mitochondrial)
701347.Entcl_2681(PF00577)(mitochondrial)
701347.Entcl_3551(PF03711) (PF01276)
701347.Entcl_1811+plastid
701347.Entcl_1818+plastid
701347.Entcl_2144(+)(mitochondrial)
701347.Entcl_4420(<)+
701347.Entcl_1943+(plastid)
701347.Entcl_0205+(ER)
701347.Entcl_2902(+)(ER); (mitochondrial)
701347.Entcl_1169(+)ER
701347.Entcl_1795+plastid
701347.Entcl_1781(+)mitochondrial
701347.Entcl_0780(PF03711) (PF01276)
701347.Entcl_0160+(mitochondrial)
701347.Entcl_1306(PF10662)(mitochondrial)
701347.Entcl_0140(+)(ER)
701347.Entcl_4257(<)(mitochondrial)
701347.Entcl_1455+(plastid)
701347.Entcl_0188(+)ER
701347.Entcl_1141(+)mitochondrial; (mitochondrial)
701347.Entcl_1196(PF03711) (PF01276)
701347.Entcl_2086+(plastid)
701347.Entcl_1699+(>)
701347.Entcl_0582+(PF03222)
701347.Entcl_0584(+)(PF01228) (PF02901)
701347.Entcl_1366+(mitochondrial)
701347.Entcl_3124(+)(PF03711) (PF01276)
701347.Entcl_3470(>)(ER)
701347.Entcl_0229(+)ER
701347.Entcl_4274(+)ER
701347.Entcl_4296(PF01228) (PF02901)
701347.Entcl_4052(PF03711) (PF01276)
701347.Entcl_0372+(>)
701347.Entcl_0255(+)(mitochondrial)
701347.Entcl_1732(PF05034) (PF07476)
701347.Entcl_2993(PF01228) (PF02901)
701347.Entcl_2196(PF00854)
701347.Entcl_2609+
701347.Entcl_4266+
701347.Entcl_1500+
701347.Entcl_1078+
701347.Entcl_0740+
701347.Entcl_0901(PF05524)
701347.Entcl_2859(+)(ER)
701347.Entcl_1233+
701347.Entcl_2291+
701347.Entcl_1653(>)
701347.Entcl_1654(>)
701347.Entcl_0068(>)
701347.Entcl_2456+
701347.Entcl_3101+
701347.Entcl_3070+
701347.Entcl_3811+
701347.Entcl_2705+
701347.Entcl_1202+
701347.Entcl_2882+
701347.Entcl_1198+
701347.Entcl_4144+
701347.Entcl_1533+
701347.Entcl_1404+
701347.Entcl_2848+
701347.Entcl_1867(>)
701347.Entcl_2060(<)
701347.Entcl_2441+not used
701347.Entcl_3545+
701347.Entcl_3004+
701347.Entcl_3399+
701347.Entcl_2717+
701347.Entcl_2714+
701347.Entcl_3530+
701347.Entcl_1553+
701347.Entcl_4151+
701347.Entcl_1520+
701347.Entcl_0728+
701347.Entcl_1380+
701347.Entcl_1095(<)
701347.Entcl_1093+
701347.Entcl_0653+
701347.Entcl_1256+
701347.Entcl_2279+
701347.Entcl_2273+
701347.Entcl_2277(PF00577)
701347.Entcl_1899+
701347.Entcl_1671+
701347.Entcl_1677(+)(ER)
701347.Entcl_1872+
701347.Entcl_2387+
701347.Entcl_2477+
701347.Entcl_3706(+)(mitochondrial); not used
701347.Entcl_3019+
701347.Entcl_3525+
701347.Entcl_4090(+)+
701347.Entcl_4366+
701347.Entcl_0806(>)
701347.Entcl_1062+
701347.Entcl_1065(PF00577)
701347.Entcl_1261+
701347.Entcl_1117+
701347.Entcl_1116(+)+
701347.Entcl_3029+
701347.Entcl_2736+
701347.Entcl_0743(>)
701347.Entcl_4390+
701347.Entcl_0513+
701347.Entcl_0517+
701347.Entcl_4173(+)(mitochondrial)
701347.Entcl_1341(+)(mitochondrial)
701347.Entcl_0706+
701347.Entcl_0897+
701347.Entcl_2811+
701347.Entcl_3062+
701347.Entcl_0074(+)(mitochondrial)
701347.Entcl_0077+
701347.Entcl_0076+
701347.Entcl_0670(+)(mitochondrial); not used
701347.Entcl_0677(<)
701347.Entcl_4112+
701347.Entcl_1292+
701347.Entcl_3834+
701347.Entcl_0011+
701347.Entcl_1103+
701347.Entcl_1219(>)
701347.Entcl_2102(+)(mitochondrial)
701347.Entcl_1336+
701347.Entcl_1961+
701347.Entcl_3189+
701347.Entcl_3294(+)(<)
701347.Entcl_3297+
701347.Entcl_3508(PF05524)
701347.Entcl_0243(+)+
701347.Entcl_3334+
701347.Entcl_0083+
701347.Entcl_0249+
701347.Entcl_0884(+)+
701347.Entcl_2801+
701347.Entcl_0660+
701347.Entcl_1919(>)
701347.Entcl_1623+
701347.Entcl_1828+
701347.Entcl_1133+
701347.Entcl_3195+
701347.Entcl_3376+
701347.Entcl_3375+
701347.Entcl_3759+
701347.Entcl_3579+
701347.Entcl_3405(>)
701347.Entcl_1042+
701347.Entcl_0478+
701347.Entcl_2839+
701347.Entcl_1582+
701347.Entcl_1904+
701347.Entcl_3984+
701347.Entcl_1834+
701347.Entcl_2345+
701347.Entcl_2346(+)(mitochondrial)
701347.Entcl_3186+
701347.Entcl_3748+
701347.Entcl_1747(+)(plastid)
701347.Entcl_2709+
701347.Entcl_3229+
701347.Entcl_1985+
701347.Entcl_3992+
701347.Entcl_1827+
701347.Entcl_0193(+)(plastid)
701347.Entcl_0862+
701347.Entcl_0154(>)
701347.Entcl_0461+
701347.Entcl_0998+
701347.Entcl_2918+
701347.Entcl_1932(+)(plastid)
701347.Entcl_1338(PF05524)
701347.Entcl_2356(<)
701347.Entcl_2223+
701347.Entcl_4250(>)
701347.Entcl_2597+
701347.Entcl_2770(<)
701347.Entcl_3314+
701347.Entcl_3312+
701347.Entcl_3770+
701347.Entcl_3798+
701347.Entcl_4206+
701347.Entcl_0219+
701347.Entcl_0323+
701347.Entcl_0455+
701347.Entcl_4141+
701347.Entcl_0039+
701347.Entcl_0528(<)
701347.Entcl_1971+
701347.Entcl_2687+
701347.Entcl_1925+
701347.Entcl_3302+
701347.Entcl_3977+
701347.Entcl_3319+
701347.Entcl_3476(>)
701347.Entcl_0445+
701347.Entcl_0028(+)(ER)
701347.Entcl_0024(>)
701347.Entcl_0538+
701347.Entcl_2974+
701347.Entcl_1178(>)
701347.Entcl_2379+
701347.Entcl_2555+
701347.Entcl_2154+
701347.Entcl_2155(+)(ER)
701347.Entcl_0117(<)
701347.Entcl_3840+
701347.Entcl_0492+
701347.Entcl_0498+
701347.Entcl_0546+
701347.Entcl_4126+
701347.Entcl_1761+
701347.Entcl_0923+
701347.Entcl_1167+
701347.Entcl_1168(PF01228)
701347.Entcl_2411+
701347.Entcl_1247(PF00854)
701347.Entcl_1716+
701347.Entcl_2522+
701347.Entcl_3210+
701347.Entcl_3851+
701347.Entcl_3457(<)
701347.Entcl_3455(PF05524)
701347.Entcl_1114+
701347.Entcl_3321+
701347.Entcl_1515(+)(ER)
701347.Entcl_1710(<)
701347.Entcl_4100+
701347.Entcl_2219+
701347.Entcl_3077+
701347.Entcl_1744(>)
701347.Entcl_1140(<)
701347.Entcl_0557+
701347.Entcl_2954+
701347.Entcl_0173+
701347.Entcl_0175+
701347.Entcl_1377(<)
701347.Entcl_1373+
701347.Entcl_1379(+)(mitochondrial)
701347.Entcl_2315+
701347.Entcl_0689+
701347.Entcl_3040(<)
701347.Entcl_2629+
701347.Entcl_3683(>)
701347.Entcl_3687(+)plastid
701347.Entcl_0610+
701347.Entcl_4063(<)
701347.Entcl_1695+
701347.Entcl_0583(<)
701347.Entcl_0588+
701347.Entcl_2782+
701347.Entcl_2438+
701347.Entcl_3763(+)(mitochondrial)
701347.Entcl_3826(<)
701347.Entcl_3057+
701347.Entcl_3127+
701347.Entcl_3123+
701347.Entcl_3697+
701347.Entcl_3475(>)
701347.Entcl_4292(PF05524)
701347.Entcl_4295(>)
701347.Entcl_1839+
701347.Entcl_2348+
701347.Entcl_0808+
701347.Entcl_1128(+)(ER)
701347.Entcl_0973+
701347.Entcl_3913+
701347.Entcl_1124+
701347.Entcl_3870+
701347.Entcl_2997+
701347.Entcl_0951+
701347.Entcl_1730(PF14330)
701347.Entcl_2336+
701347.Entcl_2212(+)(<)
701347.Entcl_2427(+)
701347.Entcl_3114(+)
701347.Entcl_2607(+)
701347.Entcl_3803(+)
701347.Entcl_2510(+)
701347.Entcl_3481(+)
701347.Entcl_4264(+)
701347.Entcl_4286(+)
701347.Entcl_2423(+)
701347.Entcl_1243(+)
701347.Entcl_0748(+)
701347.Entcl_0127(+)
701347.Entcl_0637(+)
701347.Entcl_1723(+)
701347.Entcl_2292(+)
701347.Entcl_3072(+)
701347.Entcl_3655(+)not used
701347.Entcl_3656(+)
701347.Entcl_2999(+)
701347.Entcl_1535(+)
701347.Entcl_0753(+)
701347.Entcl_0134(+)
701347.Entcl_1401(+)
701347.Entcl_1246(+)
701347.Entcl_2317(+)
701347.Entcl_2651(+)
701347.Entcl_1882(+)
701347.Entcl_0029(+)
701347.Entcl_4441(+)
701347.Entcl_3876(+)
701347.Entcl_0265(+)
701347.Entcl_0435(+)
701347.Entcl_1706(+)
701347.Entcl_2011(+)
701347.Entcl_2010(+)
701347.Entcl_2120(+)
701347.Entcl_3590(+)
701347.Entcl_3633(+)
701347.Entcl_4435(+)
701347.Entcl_4433(+)
701347.Entcl_3521(+)
701347.Entcl_3528(+)
701347.Entcl_4360(+)
701347.Entcl_4369(+)
701347.Entcl_1266(+)
701347.Entcl_1265(+)
701347.Entcl_4111(+)
701347.Entcl_2007(+)
701347.Entcl_3358(+)
701347.Entcl_3516(+)
701347.Entcl_3515(+)
701347.Entcl_4398(+)
701347.Entcl_4081(+)
701347.Entcl_2656(+)not used
701347.Entcl_1476(+)
701347.Entcl_0419(+)
701347.Entcl_2810(+)
701347.Entcl_1318(+)
701347.Entcl_1272(+)
701347.Entcl_1610(+)
701347.Entcl_2721(+)
701347.Entcl_2032(+)
701347.Entcl_3039(+)
701347.Entcl_2747(+)
701347.Entcl_4415(+)
701347.Entcl_3626(+)
701347.Entcl_1809(+)
701347.Entcl_0242(+)
701347.Entcl_1445(+)
701347.Entcl_0400(+)
701347.Entcl_1590(+)
701347.Entcl_0663(+)
701347.Entcl_3745(+)
701347.Entcl_0436(+)
701347.Entcl_2110(+)
701347.Entcl_3198(+)
701347.Entcl_3973(+)
701347.Entcl_3976(+)
701347.Entcl_3570(+)
701347.Entcl_4352(+)
701347.Entcl_4194(+)
701347.Entcl_0233(+)
701347.Entcl_4003(+)
701347.Entcl_0949(+)
701347.Entcl_1595(+)
701347.Entcl_0275(+)
701347.Entcl_1045(+)
701347.Entcl_0184(+)
701347.Entcl_0870(+)not used
701347.Entcl_0874(+)
701347.Entcl_0052(+)
701347.Entcl_0692(+)
701347.Entcl_2233(+)
701347.Entcl_1120(+)
701347.Entcl_2583(+)
701347.Entcl_2562(+)
701347.Entcl_3743(+)
701347.Entcl_4215(+)
701347.Entcl_3412(+)
701347.Entcl_4324(+)
701347.Entcl_1825(+)
701347.Entcl_0042(+)
701347.Entcl_0681(+)
701347.Entcl_0684(+)
701347.Entcl_1333(+)
701347.Entcl_1334(+)
701347.Entcl_0714(+)
701347.Entcl_2222(+)
701347.Entcl_1154(+)
701347.Entcl_2772(+)
701347.Entcl_1544(+)
701347.Entcl_3425(+)
701347.Entcl_0642(+)
701347.Entcl_0641(+)
701347.Entcl_3895(+)
701347.Entcl_2542(+)
701347.Entcl_3098(+)
701347.Entcl_0007(+)
701347.Entcl_3369(+)
701347.Entcl_3788(+)
701347.Entcl_3789(+)
701347.Entcl_4301(+)
701347.Entcl_4419(+)
701347.Entcl_0207(+)
701347.Entcl_0202(+)
701347.Entcl_1791(+)
701347.Entcl_1790(+)
701347.Entcl_0843(+)
701347.Entcl_0849(+)
701347.Entcl_1009(+)
701347.Entcl_4047(+)
701347.Entcl_1316(+)
701347.Entcl_4276(+)
701347.Entcl_1958(+)
701347.Entcl_3150(+)
701347.Entcl_2796(+)
701347.Entcl_3339(+)
701347.Entcl_0525(+)
701347.Entcl_4314(+)
701347.Entcl_4315(+)
701347.Entcl_4008(+)
701347.Entcl_0304(+)
701347.Entcl_0942(+)
701347.Entcl_0783(+)
701347.Entcl_0785(+)
701347.Entcl_1017(+)
701347.Entcl_1164(+)
701347.Entcl_1492(+)
701347.Entcl_1327(+)
701347.Entcl_2412(+)
701347.Entcl_2306(+)
701347.Entcl_3145(+)
701347.Entcl_3218(+)
701347.Entcl_4072(+)
701347.Entcl_2363(+)
701347.Entcl_4106(+)
701347.Entcl_0552(+)
701347.Entcl_0550(+)
701347.Entcl_2957(+)
701347.Entcl_1378(+)
701347.Entcl_1209(+)
701347.Entcl_1753(+)
701347.Entcl_2313(+)
701347.Entcl_2310(+)
701347.Entcl_3139(+)
701347.Entcl_2628(+)
701347.Entcl_3835(+)
701347.Entcl_3467(+)
701347.Entcl_4241(+)
701347.Entcl_0821(+)
701347.Entcl_0501(+)
701347.Entcl_3831(+)
701347.Entcl_0768(+)
701347.Entcl_0817(+)
701347.Entcl_1362(+)
701347.Entcl_3760(+)
701347.Entcl_2983(+)
701347.Entcl_2322(+)
701347.Entcl_2505(+)
701347.Entcl_2058(+)
701347.Entcl_3273(+)
701347.Entcl_3270(+)
701347.Entcl_3694(+)
701347.Entcl_3673(+)
701347.Entcl_3583(+)
701347.Entcl_1954(+)
701347.Entcl_1278(+)
701347.Entcl_2781(+)
701347.Entcl_0774(+)
701347.Entcl_0114(+)
701347.Entcl_0894(+)
701347.Entcl_0950(+)
701347.Entcl_1641(+)
701347.Entcl_1643(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================