Metamenu

Effective results for Pediococcus claussenii ATCC BAA-344 (eggnog40)

Summary

Number of putative secreted proteins: 12
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 12 proteins (0 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
701521.PECL_618(PF00344)ER
701521.PECL_1576(PF06736)ER
701521.PECL_1862(PF06736)ER; (ER)
701521.PECL_1286(PF00344)(mitochondrial)
701521.PECL_1686(PF03577)plastid
701521.PECL_128(PF06736)(ER)
701521.PECL_578(PF06100)(ER)
701521.PECL_1800(PF06736)
701521.PECL_1792(PF03577)
701521.PECL_1565(PF06100)
701521.PECL_1348(PF03577)
701521.PECL_1029(PF03577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================