Effective results for Turicibacter sanguinis PC909 (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 73 proteins (8 high, 65 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
702450.CUW_1460				(PF06925) (PF04101)	(ER)
702450.CUW_1204				(PF04101) (PF06925)	(mitochondrial)
702450.CUW_0218				(PF01554)	(ER)
702450.CUW_2570				(PF01554)	ER
702450.CUW_0868				(PF01554)	ER
702450.CUW_0043				(PF01554)	ER
702450.CUW_1629				(PF16403)	(mitochondrial)
702450.CUW_2227				(PF01554)	ER
702450.CUW_0127				(PF05935)	ER
702450.CUW_0800				(PF04892)	ER
702450.CUW_2665				(PF12740)	ER
702450.CUW_1845				PF07460	(mitochondrial)
702450.CUW_2554				(PF12740)	ER
702450.CUW_1389				(PF01554)	ER
702450.CUW_2280				(PF16403)	ER
702450.CUW_2073				(PF01554)	ER; (ER)
702450.CUW_2759				(PF04101)	(ER)
702450.CUW_2582				(PF05935)	ER
702450.CUW_2637				(PF04892)	ER
702450.CUW_1221				(PF02275)	mitochondrial; (mitochondrial)
702450.CUW_0770				(PF01554)	ER
702450.CUW_1544				(PF04892)	ER
702450.CUW_1201				(PF11070)	ER
702450.CUW_1974				(PF16403)	ER
702450.CUW_0932				(PF01554)	ER; (ER)
702450.CUW_2769				(PF01554)	ER
702450.CUW_1945				(PF04892)	ER
702450.CUW_2306				(PF16403)	ER
702450.CUW_0923				(PF04892)	ER
702450.CUW_0925				(PF04892)	ER
702450.CUW_1290				(PF00163)	(mitochondrial); not used
702450.CUW_0035				(PF01554)	(plastid)
702450.CUW_2620				(PF01554)	(ER)
702450.CUW_1584				(PF04101)	(mitochondrial)
702450.CUW_2243				PF14311	not used
702450.CUW_1889				(PF14249)
702450.CUW_2684				PF08513
702450.CUW_0135				(PF01554)
702450.CUW_0918				(PF01554)
702450.CUW_2211				(PF02275)
702450.CUW_0648				PF14311
702450.CUW_0100				(PF09359)
702450.CUW_1844				(PF13597)
702450.CUW_1846				(PF13597)
702450.CUW_1848				(PF13597)
702450.CUW_1289				(PF00163)
702450.CUW_1660				(PF04892)
702450.CUW_2557				(PF02275)
702450.CUW_2063				(PF01712)
702450.CUW_2060				(PF01712)
702450.CUW_2264				PF12638
702450.CUW_0026				(PF09359)
702450.CUW_2271				PF12638
702450.CUW_2851				PF14311	not used
702450.CUW_1248				(PF12513)
702450.CUW_1569				(PF01554)
702450.CUW_0121				(PF01554)
702450.CUW_1913				(PF01554)
702450.CUW_0959				(PF01554)
702450.CUW_0312				(PF01554)
702450.CUW_0224				(PF02275)
702450.CUW_0427				(PF01554)
702450.CUW_1218				(PF01554)
702450.CUW_0230				(PF06925)
702450.CUW_0231				(PF04101)
702450.CUW_2792				(PF04101)
702450.CUW_2778				(PF01712)
702450.CUW_2777				(PF01712)
702450.CUW_2178				(PF06189)
702450.CUW_2176				(PF06189)
702450.CUW_2170				(PF03644)
702450.CUW_0441				PF05691
702450.CUW_2765				(PF01554)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================