Effective results for Deinococcus maricopensis DSM 21211 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 35 proteins (4 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
709986.Deima_1203				(PF05922)	ER
709986.Deima_2642				PF09056	ER
709986.Deima_1833				(PF04098)	(mitochondrial)
709986.Deima_2356				(PF07466)	ER
709986.Deima_1259				(PF07466)	ER
709986.Deima_2577				(PF05922)	ER
709986.Deima_0732				(PF13529)	ER
709986.Deima_3192				(PF05922)	ER
709986.Deima_0143				(PF13529)	ER
709986.Deima_0413				(PF10138)	(mitochondrial)
709986.Deima_1170				(PF10162)	ER
709986.Deima_3157				PF09056	ER
709986.Deima_2286				PF09056	ER
709986.Deima_2614				(PF13529)	(mitochondrial)
709986.Deima_2317				(PF05922)	ER
709986.Deima_2318				(PF05922)	ER
709986.Deima_2177				(PF13668)	(ER)
709986.Deima_2176				(PF13668)	(ER)
709986.Deima_1927				(PF13668)	(ER)
709986.Deima_2656				(PF03449)
709986.Deima_1721				(PF03449)
709986.Deima_1863				(PF09414)
709986.Deima_2167				(PF10138)
709986.Deima_2760				(PF01991)
709986.Deima_2496				PF08152
709986.Deima_1623				(PF13151)
709986.Deima_0576				(PF10138)
709986.Deima_2034				(PF13668)
709986.Deima_2991				(PF00025)
709986.Deima_0351				(PF09414)
709986.Deima_2465				(PF03449)
709986.Deima_1965				(PF03449)
709986.Deima_3228				(PF04930)
709986.Deima_3049				(PF14328)
709986.Deima_3042				(PF13529)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================