Effective results for Helicobacter suis HS1 (eggnog40)
Summary
Number of putative secreted proteins: 51
- Predicted by T4SEpre: 60
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 3 proteins (0 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
710393.HSUHS1_0229 | + | ER; (ER) | |||
710393.HSUHS1_0896 | + | (ER); (mitochondrial) | |||
710393.HSUHS1_0444 | + | (ER) | |||
710393.HSUHS1_0714 | + | ER | |||
710393.HSUHS1_1052 | (PF01535) | mitochondrial; (mitochondrial) | |||
710393.HSUHS1_1212 | + | ER | |||
710393.HSUHS1_0067 | + | ER | |||
710393.HSUHS1_0196 | + | ER | |||
710393.HSUHS1_0146 | + | ER | |||
710393.HSUHS1_0829 | + | (mitochondrial) | |||
710393.HSUHS1_0548 | + | (ER) | |||
710393.HSUHS1_0321 | + | (mitochondrial) | |||
710393.HSUHS1_1040 | + | ||||
710393.HSUHS1_1049 | (PF05870) | ||||
710393.HSUHS1_0844 | + | ||||
710393.HSUHS1_0964 | + | ||||
710393.HSUHS1_0440 | + | ||||
710393.HSUHS1_1092 | + | ||||
710393.HSUHS1_0733 | + | ||||
710393.HSUHS1_0635 | + | ||||
710393.HSUHS1_1104 | + | ||||
710393.HSUHS1_0699 | + | ||||
710393.HSUHS1_0911 | + | ||||
710393.HSUHS1_0006 | + | ||||
710393.HSUHS1_0007 | + | ||||
710393.HSUHS1_0003 | + | ||||
710393.HSUHS1_0096 | + | ||||
710393.HSUHS1_0315 | + | ||||
710393.HSUHS1_0641 | + | ||||
710393.HSUHS1_1063 | + | ||||
710393.HSUHS1_0513 | + | ||||
710393.HSUHS1_0510 | + | ||||
710393.HSUHS1_0763 | + | ||||
710393.HSUHS1_0762 | + | ||||
710393.HSUHS1_0219 | + | ||||
710393.HSUHS1_0613 | + | ||||
710393.HSUHS1_0615 | + | ||||
710393.HSUHS1_0588 | + | ||||
710393.HSUHS1_0839 | + | ||||
710393.HSUHS1_0403 | + | ||||
710393.HSUHS1_0395 | + | ||||
710393.HSUHS1_0857 | + | ||||
710393.HSUHS1_1050 | (PF05870) | ||||
710393.HSUHS1_0186 | + | ||||
710393.HSUHS1_0756 | + | ||||
710393.HSUHS1_0151 | + | ||||
710393.HSUHS1_0562 | + | ||||
710393.HSUHS1_1008 | + | ||||
710393.HSUHS1_0415 | + | ||||
710393.HSUHS1_0063 | + | ||||
710393.HSUHS1_0206 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.4 (14/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.4 (14/10 KEGG proteins)