Effective results for Helicobacter suis HS1 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 60
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 3 proteins (0 high, 3 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
710393.HSUHS1_0229+ER; (ER)
710393.HSUHS1_0896+(ER); (mitochondrial)
710393.HSUHS1_0444+(ER)
710393.HSUHS1_0714+ER
710393.HSUHS1_1052(PF01535)mitochondrial; (mitochondrial)
710393.HSUHS1_1212+ER
710393.HSUHS1_0067+ER
710393.HSUHS1_0196+ER
710393.HSUHS1_0146+ER
710393.HSUHS1_0829+(mitochondrial)
710393.HSUHS1_0548+(ER)
710393.HSUHS1_0321+(mitochondrial)
710393.HSUHS1_1040+
710393.HSUHS1_1049(PF05870)
710393.HSUHS1_0844+
710393.HSUHS1_0964+
710393.HSUHS1_0440+
710393.HSUHS1_1092+
710393.HSUHS1_0733+
710393.HSUHS1_0635+
710393.HSUHS1_1104+
710393.HSUHS1_0699+
710393.HSUHS1_0911+
710393.HSUHS1_0006+
710393.HSUHS1_0007+
710393.HSUHS1_0003+
710393.HSUHS1_0096+
710393.HSUHS1_0315+
710393.HSUHS1_0641+
710393.HSUHS1_1063+
710393.HSUHS1_0513+
710393.HSUHS1_0510+
710393.HSUHS1_0763+
710393.HSUHS1_0762+
710393.HSUHS1_0219+
710393.HSUHS1_0613+
710393.HSUHS1_0615+
710393.HSUHS1_0588+
710393.HSUHS1_0839+
710393.HSUHS1_0403+
710393.HSUHS1_0395+
710393.HSUHS1_0857+
710393.HSUHS1_1050(PF05870)
710393.HSUHS1_0186+
710393.HSUHS1_0756+
710393.HSUHS1_0151+
710393.HSUHS1_0562+
710393.HSUHS1_1008+
710393.HSUHS1_0415+
710393.HSUHS1_0063+
710393.HSUHS1_0206+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.4 (14/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================