Effective results for Enterobacter cloacae subsp. cloacae ATCC 13047 (eggnog40)

Summary

Number of putative secreted proteins: 802
- Predicted by EffectiveT3: 168 (high confidence), 349 (low confidence)
- Predicted by EffectiveCCBD: 24 within, 20 before, 48 behind expected region 25..70aa
- Predicted by T4SEpre: 110
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 145 proteins (71 high, 74 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
716541.ECL_04202	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_02475				PF13276 (PF13683)	(mitochondrial)
716541.ECL_03211	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_01698	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_03811				PF13276 (PF13683)	(mitochondrial)
716541.ECL_03481				PF13276 (PF13683)	(mitochondrial)
716541.ECL_03483	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_00164				PF13276 (PF13683)	(mitochondrial)
716541.ECL_02710				PF13276 (PF13683)	(mitochondrial)
716541.ECL_05017	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_00394				PF13276 (PF13683)	(mitochondrial)
716541.ECL_03702				PF13276 (PF13683)	(mitochondrial)
716541.ECL_04895	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_03733		+		(PF05231)	ER
716541.ECL_02588				PF13276 (PF13683)	(mitochondrial)
716541.ECL_02130				PF13276 (PF13683)	(mitochondrial)
716541.ECL_01116	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_03418				PF13276 (PF13683)	(mitochondrial)
716541.ECL_02065	(+)			(PF00665) PF13276	mitochondrial
716541.ECL_02308			+		(mitochondrial)
716541.ECL_04445				(PF00577)	mitochondrial
716541.ECL_01121				(PF05231)	ER
716541.ECL_04209				(PF00665)	(mitochondrial); (plastid)
716541.ECL_02787			+		ER
716541.ECL_01280				(PF00345)	ER
716541.ECL_04832			+		ER
716541.ECL_02556	+				(mitochondrial); (plastid)
716541.ECL_03229	+				ER
716541.ECL_01686			+		mitochondrial
716541.ECL_03020		(>)			ER
716541.ECL_00071				(PF00345)	ER
716541.ECL_02647		(>)			ER
716541.ECL_00226	+				(ER)
716541.ECL_04322			+		ER
716541.ECL_04554			+		ER
716541.ECL_00482				(PF00665)	mitochondrial
716541.ECL_04170		(>)			ER
716541.ECL_00065				(PF00345)	ER
716541.ECL_00064				(PF00577)	ER
716541.ECL_01758		+			ER
716541.ECL_04446			+		ER
716541.ECL_02990			+		ER
716541.ECL_03699		(>)			(mitochondrial)
716541.ECL_02401		(>)			mitochondrial
716541.ECL_04616		(>)			ER
716541.ECL_00055			+		ER
716541.ECL_04809		(>)			ER
716541.ECL_03591	(+)		+	(PF00665) PF13276
716541.ECL_00162	+				(ER)
716541.ECL_03217				(PF00665)	(mitochondrial); (plastid)
716541.ECL_02984			+		ER
716541.ECL_04374				(PF00345)	ER
716541.ECL_04373				(PF00577)	ER
716541.ECL_00462				(PF00665)	mitochondrial
716541.ECL_01189			+		ER
716541.ECL_01180			+		(mitochondrial)
716541.ECL_04606				(PF00345)	ER
716541.ECL_04605				(PF00577)	ER
716541.ECL_04604		(>)			ER
716541.ECL_03580				(PF00665)	(mitochondrial); (plastid)
716541.ECL_00130		(<)			(ER)
716541.ECL_04901			+		(mitochondrial)
716541.ECL_00917			+		ER
716541.ECL_02265			+		ER
716541.ECL_02280				(PF00665)	(mitochondrial); (plastid)
716541.ECL_00851		(<)			ER
716541.ECL_02380				(PF00577)	ER
716541.ECL_05044			+		(mitochondrial)
716541.ECL_05084				(PF00577)	ER
716541.ECL_05085				(PF00345)	ER
716541.ECL_01097		(>)			ER
716541.ECL_02179				(PF13347)	(ER)
716541.ECL_02177	+				(mitochondrial)
716541.ECL_02398		(>)			ER
716541.ECL_03029	+	(>)			(ER)
716541.ECL_03270		(>)			ER
716541.ECL_00092				(PF00345)	(mitochondrial)
716541.ECL_00091				(PF00577)	ER
716541.ECL_00196	(+)		+		(mitochondrial); plastid
716541.ECL_01410				(PF00577)	ER
716541.ECL_01707	+				(ER)
716541.ECL_00940				(PF00577)	ER
716541.ECL_00941				(PF00345)	(ER)
716541.ECL_04394			+		ER
716541.ECL_01962			+		ER
716541.ECL_00897		(<)			(mitochondrial)
716541.ECL_00556		+			(mitochondrial)
716541.ECL_00372				(PF00345)	(ER); (plastid)
716541.ECL_00371				(PF00577)	ER
716541.ECL_05063			+		ER
716541.ECL_05116			+		(mitochondrial)
716541.ECL_02932				(PF00577)	(ER)
716541.ECL_02931				(PF00345)	ER
716541.ECL_00416			+		ER
716541.ECL_04419				(PF00959)	ER
716541.ECL_01281				(PF00577)	ER
716541.ECL_01283	+				ER
716541.ECL_03866				(PF07678)	ER
716541.ECL_04139		+			ER
716541.ECL_00343		(>)			ER
716541.ECL_01355		+			(ER)
716541.ECL_05109			+		ER
716541.ECL_05108				(PF13347)	ER
716541.ECL_02125		+			ER
716541.ECL_02237		+			ER
716541.ECL_02833				(PF00665)	(mitochondrial); (plastid)
716541.ECL_00573			+		ER
716541.ECL_01626		(>)			ER; (ER)
716541.ECL_04958			+		ER
716541.ECL_01472		(>)			ER
716541.ECL_00505		+			(mitochondrial)
716541.ECL_01471			+		ER
716541.ECL_00326		(>)			(mitochondrial); mitochondrial
716541.ECL_00037				(PF05231)	ER
716541.ECL_02597	+				ER; (ER)
716541.ECL_03083		(<)			(ER)
716541.ECL_03310		(>)			(mitochondrial)
716541.ECL_01409				(PF00345)	ER
716541.ECL_00517				(PF00665) PF13276	(mitochondrial)
716541.ECL_01107				(PF00345)	ER
716541.ECL_01106				(PF00577)	ER
716541.ECL_04199	+		+		(plastid)
716541.ECL_00205		(<)			(ER)
716541.ECL_00687	(+)			PF13276	mitochondrial
716541.ECL_00682				PF01527 PF13276 (PF13683)
716541.ECL_04607			+		ER
716541.ECL_01868			+		(mitochondrial); mitochondrial
716541.ECL_01003	+				(mitochondrial); mitochondrial
716541.ECL_00520				(PF00665)	(mitochondrial); (plastid)
716541.ECL_01133		(>)			ER
716541.ECL_01007		(<)			ER
716541.ECL_04036		(>)			ER
716541.ECL_00013	+				(mitochondrial)
716541.ECL_00019		(>)			ER
716541.ECL_03795				(PF05231)	ER
716541.ECL_01653			+		ER
716541.ECL_01497		+			ER
716541.ECL_04204	(+)			(PF00665) PF13276
716541.ECL_01306				(PF03796) (PF00772)
716541.ECL_00310				(PF03796) (PF00772)
716541.ECL_04944	+				(ER)
716541.ECL_05011		+	+
716541.ECL_01204	(+)				(mitochondrial)
716541.ECL_04674			+		(mitochondrial)
716541.ECL_01508		(<)			(mitochondrial)
716541.ECL_04509		(<)			(ER)
716541.ECL_04226		+			not used
716541.ECL_01218	(+)				(mitochondrial)
716541.ECL_04364	(+)				(mitochondrial)
716541.ECL_00586	+		+
716541.ECL_02534	+	(>)
716541.ECL_00291	+				(ER); not used
716541.ECL_03572				(PF00959)	(mitochondrial)
716541.ECL_02296				PF01527	(mitochondrial); not used
716541.ECL_02964	(+)				(mitochondrial)
716541.ECL_03583				(PF03796) (PF00772)
716541.ECL_02289				(PF00665) PF13276
716541.ECL_00452	(+)				ER
716541.ECL_02424	+				plastid
716541.ECL_00144				(PF00665) PF13276
716541.ECL_03487	(+)			(PF00665) PF13276
716541.ECL_02772	+		+
716541.ECL_02774	(+)			(PF00665) PF13276
716541.ECL_02381				(PF00345)	(ER)
716541.ECL_00708				(PF13347)	(ER)
716541.ECL_02509	+				(mitochondrial); not used
716541.ECL_04921				(PF00959)	(mitochondrial)
716541.ECL_03549	+				(plastid)
716541.ECL_01717	+				(plastid)
716541.ECL_00437	+				(ER)
716541.ECL_00389	(+)			(PF00665) PF13276
716541.ECL_02711	(+)			(PF00665) PF13276
716541.ECL_01705	(+)				(mitochondrial); plastid
716541.ECL_04731	+	(>)
716541.ECL_00398				(PF03796) (PF00772)
716541.ECL_04425			+	(PF05929)
716541.ECL_03701				(PF00665) PF13276
716541.ECL_01605	(+)				(mitochondrial)
716541.ECL_02936	(+)			(PF00665) PF13276
716541.ECL_03282	+	+
716541.ECL_00412		+			(ER)
716541.ECL_03284	+				plastid
716541.ECL_01356	+				(plastid)
716541.ECL_01357	+				(plastid)
716541.ECL_05107				(PF13347)	(ER)
716541.ECL_02341	+				(mitochondrial)
716541.ECL_02729			+		(mitochondrial)
716541.ECL_02238	(+)				(ER); (mitochondrial)
716541.ECL_02134				(PF00665)	(mitochondrial)
716541.ECL_03478	+				(plastid)
716541.ECL_02569		(>)			(plastid)
716541.ECL_02030	(+)				mitochondrial
716541.ECL_00753	+				(plastid)
716541.ECL_02257	+	(<)
716541.ECL_00215	(+)				ER
716541.ECL_03665	+				(mitochondrial)
716541.ECL_00690	+				(plastid)
716541.ECL_03312	(+)				ER
716541.ECL_03272	(+)				(mitochondrial)
716541.ECL_03305	+				(plastid)
716541.ECL_03304	+				(plastid)
716541.ECL_02232	(+)				(mitochondrial)
716541.ECL_05148		(<)	+
716541.ECL_01247			+
716541.ECL_02892			+
716541.ECL_04561	+
716541.ECL_00657	+
716541.ECL_01128		+
716541.ECL_04203				PF01527
716541.ECL_04201				PF01527
716541.ECL_04459		(>)
716541.ECL_00222	(+)				(ER)
716541.ECL_01014	+
716541.ECL_01017	+
716541.ECL_03929			+
716541.ECL_05006		(>)
716541.ECL_02474				PF01527
716541.ECL_02871	+
716541.ECL_01663		(>)
716541.ECL_04946	+
716541.ECL_03220	(+)				(plastid)
716541.ECL_00792	+
716541.ECL_00796		+
716541.ECL_01689		(>)
716541.ECL_03967			+
716541.ECL_05018				PF01527
716541.ECL_04018	(+)	(>)
716541.ECL_04558	+
716541.ECL_02469	+
716541.ECL_04462	+
716541.ECL_03569	+
716541.ECL_01206	+
716541.ECL_02085	+
716541.ECL_00182				(PF13347)
716541.ECL_00106	+
716541.ECL_01511			+
716541.ECL_03689				PF01527
716541.ECL_01699				PF01527
716541.ECL_03907		(>)
716541.ECL_04176	(+)		+
716541.ECL_02419	(+)				(plastid)
716541.ECL_02529			+
716541.ECL_00068			+
716541.ECL_03279	+
716541.ECL_02635	+
716541.ECL_02697			+
716541.ECL_03695			+
716541.ECL_01992	+
716541.ECL_02740		+
716541.ECL_03347	+
716541.ECL_03342			+
716541.ECL_03340		+
716541.ECL_03208				(PF00959)
716541.ECL_03204	+
716541.ECL_03541		(>)
716541.ECL_03118	(+)				(ER)
716541.ECL_03116	+
716541.ECL_03975				(PF01300)
716541.ECL_01044	+
716541.ECL_04369				(PF00577)
716541.ECL_04528	+
716541.ECL_00478	+
716541.ECL_04100	+
716541.ECL_00580	+
716541.ECL_00299		+
716541.ECL_01075		(>)
716541.ECL_00051	+
716541.ECL_04297		+
716541.ECL_03590				PF01527
716541.ECL_03597	+				not used
716541.ECL_01535	+
716541.ECL_02624	+
716541.ECL_01453	+
716541.ECL_04979			+
716541.ECL_03422	+
716541.ECL_00873	+
716541.ECL_03575	+
716541.ECL_03578	(+)				(mitochondrial)
716541.ECL_00909				(PF13347)
716541.ECL_03218				PF01527
716541.ECL_03210				PF01527
716541.ECL_03212			+
716541.ECL_02290				PF01527
716541.ECL_00617				(PF13347)
716541.ECL_02966	+
716541.ECL_02967	+
716541.ECL_00266	+
716541.ECL_04370	(+)			(PF00345)
716541.ECL_04379	+
716541.ECL_00461				PF01527
716541.ECL_04113			+
716541.ECL_03812				PF01527
716541.ECL_02433	+
716541.ECL_04129	+
716541.ECL_00044	+
716541.ECL_03743	+
716541.ECL_03581				PF01527
716541.ECL_04510	+
716541.ECL_01522				(PF13347)
716541.ECL_01425			+
716541.ECL_01422				(PF13347)
716541.ECL_04095			+
716541.ECL_03564			+
716541.ECL_01732				(PF01300)
716541.ECL_00911	(+)				mitochondrial; not used
716541.ECL_00666	+				not used
716541.ECL_02281				PF01527
716541.ECL_02284	+
716541.ECL_02992			+
716541.ECL_02970	+
716541.ECL_02977	+
716541.ECL_01461			+
716541.ECL_04525	+
716541.ECL_00736	(+)				plastid
716541.ECL_03007	+
716541.ECL_00458		(>)
716541.ECL_01085	+				not used
716541.ECL_00145				PF01527
716541.ECL_01432	+
716541.ECL_03484				PF01527
716541.ECL_03480				PF01527
716541.ECL_03488				PF01527
716541.ECL_02779	+
716541.ECL_02775				PF01527
716541.ECL_03390				(PF05231)
716541.ECL_04765			+
716541.ECL_01892		(<)
716541.ECL_00921				(PF00959)
716541.ECL_03976				(PF01300)
716541.ECL_03972				(PF01300)
716541.ECL_02160	(+)		+
716541.ECL_03163	(+)	+
716541.ECL_03169	+
716541.ECL_02384	+
716541.ECL_04359	(+)				(mitochondrial)
716541.ECL_03540		(>)
716541.ECL_04422			+
716541.ECL_03830	(+)			(PF00665)
716541.ECL_03941			+
716541.ECL_02560	+
716541.ECL_02561	+
716541.ECL_01545	+
716541.ECL_04926	+
716541.ECL_03494			+
716541.ECL_02709				PF01527
716541.ECL_04427	+
716541.ECL_04629			+
716541.ECL_02175	+				(mitochondrial)
716541.ECL_00622	(+)				(plastid)
716541.ECL_02953		(<)
716541.ECL_02391				(PF13347)
716541.ECL_00710	+
716541.ECL_00435	+
716541.ECL_00433			+
716541.ECL_02095	(+)				(mitochondrial)
716541.ECL_04386	+
716541.ECL_03848				(PF16485)
716541.ECL_01392	+
716541.ECL_04659				(PF01300)
716541.ECL_04655	+
716541.ECL_02369	+
716541.ECL_04586	+
716541.ECL_03714	+
716541.ECL_00165				PF01527
716541.ECL_01027		(>)
716541.ECL_02719			+
716541.ECL_02712				PF01527
716541.ECL_01703	+
716541.ECL_02008			+
716541.ECL_03443	+
716541.ECL_02142	+
716541.ECL_03140				PF15636
716541.ECL_00421	+
716541.ECL_04429	+
716541.ECL_01450	+
716541.ECL_00395				PF01527
716541.ECL_00390				PF01527
716541.ECL_02548			+
716541.ECL_03879		(>)
716541.ECL_01396	+
716541.ECL_03707			+
716541.ECL_03706			+
716541.ECL_03703				PF01527
716541.ECL_01460	+
716541.ECL_05118	+
716541.ECL_02463			+
716541.ECL_01317	(+)		+
716541.ECL_00235	+
716541.ECL_02110	+
716541.ECL_04894				PF01527
716541.ECL_03521			+
716541.ECL_02152	(+)				(plastid)
716541.ECL_00959		+
716541.ECL_04329		(>)
716541.ECL_01915	+
716541.ECL_02937				PF01527
716541.ECL_01822	+
716541.ECL_03287	(+)				(mitochondrial)
716541.ECL_03197	+
716541.ECL_03190	+
716541.ECL_04415			+
716541.ECL_03846	(+)				(mitochondrial)
716541.ECL_04098	+
716541.ECL_03990		(>)
716541.ECL_05074	+
716541.ECL_04564			+
716541.ECL_03737	+
716541.ECL_04457	+
716541.ECL_02802	(+)				(ER)
716541.ECL_02024	+
716541.ECL_02121			+
716541.ECL_03633			+
716541.ECL_03462		(<)
716541.ECL_02832				PF01527
716541.ECL_04646	+
716541.ECL_00409	+
716541.ECL_00402	+
716541.ECL_04710	(+)				(mitochondrial)
716541.ECL_03188			+
716541.ECL_02907	+
716541.ECL_03181	+
716541.ECL_00572	+
716541.ECL_04400			+
716541.ECL_01166		(>)
716541.ECL_03502			+
716541.ECL_04089	+
716541.ECL_02648	+
716541.ECL_03980	+
716541.ECL_01292	+
716541.ECL_01291	+
716541.ECL_01298	+				not used
716541.ECL_03027	+
716541.ECL_01583		(>)
716541.ECL_00199			+
716541.ECL_02587				PF01527
716541.ECL_03505	(+)				(plastid)
716541.ECL_03500	(+)				(mitochondrial)
716541.ECL_01753	(+)	(>)
716541.ECL_03509	(+)				(ER)
716541.ECL_02055	+
716541.ECL_02135				PF01527
716541.ECL_02132				PF01527
716541.ECL_02131				PF01527
716541.ECL_01623		(<)
716541.ECL_02563	+
716541.ECL_02037	(+)				(mitochondrial)
716541.ECL_01933		+
716541.ECL_02225		(<)
716541.ECL_00757	+
716541.ECL_01802	+
716541.ECL_01803	+
716541.ECL_04551		(<)
716541.ECL_01801			+
716541.ECL_03267	(+)				(mitochondrial)
716541.ECL_02919	(+)				(mitochondrial)
716541.ECL_02251		(>)
716541.ECL_00503	+				not used
716541.ECL_01115				PF01527
716541.ECL_03082		(>)
716541.ECL_03085	+
716541.ECL_03916	+
716541.ECL_04050				(PF01300)
716541.ECL_00219	(+)	+
716541.ECL_00211	+				not used
716541.ECL_00320			+
716541.ECL_05023		(>)
716541.ECL_01339			+
716541.ECL_01335	+
716541.ECL_03664	+
716541.ECL_00034	(+)				(ER)
716541.ECL_01240	+
716541.ECL_01249	+
716541.ECL_04865			+
716541.ECL_00694	+
716541.ECL_00692	+
716541.ECL_02852				(PF05929)
716541.ECL_01403			+
716541.ECL_03275	+
716541.ECL_03529			+
716541.ECL_00518				PF01527
716541.ECL_04269	+
716541.ECL_04518	+
716541.ECL_04517			+
716541.ECL_04193	+
716541.ECL_03923	+
716541.ECL_00209	(+)				(plastid)
716541.ECL_03810	+
716541.ECL_00334		(<)
716541.ECL_00330	(+)		+
716541.ECL_01329	+
716541.ECL_01322	+
716541.ECL_05158		(>)
716541.ECL_00197			+
716541.ECL_03670	+
716541.ECL_00025		(>)
716541.ECL_01259	+
716541.ECL_03417				PF01527
716541.ECL_00686				PF01527
716541.ECL_00680	(+)				(ER)
716541.ECL_01796	(+)				(plastid)
716541.ECL_00675				(PF13347)
716541.ECL_01869	+
716541.ECL_02846	+
716541.ECL_02845			+
716541.ECL_03246	(+)				(plastid)
716541.ECL_04544			+
716541.ECL_00528			+
716541.ECL_01715	+
716541.ECL_04210				PF01527
716541.ECL_03544			+
716541.ECL_01009	+
716541.ECL_03939	(+)	+
716541.ECL_00232	+
716541.ECL_01319				(PF00959)
716541.ECL_02688	+
716541.ECL_04598		(>)
716541.ECL_01267	(+)	(<)
716541.ECL_02064				PF01527
716541.ECL_02664	+
716541.ECL_02275	(+)	(<)
716541.ECL_00836	+
716541.ECL_04410	+
716541.ECL_03336	(+)				(ER)
716541.ECL_01074		(>)
716541.ECL_04001	(+)				(mitochondrial)
716541.ECL_03251	(+)
716541.ECL_00784	(+)
716541.ECL_01877	(+)
716541.ECL_00531	(+)
716541.ECL_00223	(+)
716541.ECL_04025	(+)
716541.ECL_03928	(+)
716541.ECL_00315	(+)
716541.ECL_00009	(+)
716541.ECL_04831	(+)
716541.ECL_02557	(+)
716541.ECL_00336	(+)				not used
716541.ECL_03431	(+)
716541.ECL_02041	(+)
716541.ECL_03327	(+)
716541.ECL_00799	(+)
716541.ECL_02865	(+)
716541.ECL_04305	(+)
716541.ECL_04230	(+)
716541.ECL_04236	(+)
716541.ECL_04542	(+)
716541.ECL_02462	(+)
716541.ECL_00188	(+)
716541.ECL_04330	(+)
716541.ECL_01202	(+)
716541.ECL_02089	(+)
716541.ECL_02087	(+)
716541.ECL_01516	(+)
716541.ECL_04953	(+)
716541.ECL_01855	(+)
716541.ECL_00600	(+)
716541.ECL_03122	(+)
716541.ECL_00489	(+)				not used
716541.ECL_04174	(+)
716541.ECL_02415	(+)
716541.ECL_01215	(+)
716541.ECL_04818	(+)				not used
716541.ECL_00118	(+)
716541.ECL_01503	(+)
716541.ECL_02639	(+)
716541.ECL_02632	(+)
716541.ECL_02244	(+)
716541.ECL_02243	(+)
716541.ECL_00801	(+)
716541.ECL_05037	(+)
716541.ECL_04965	(+)
716541.ECL_01756	(+)
716541.ECL_00969	(+)
716541.ECL_00277	(+)
716541.ECL_04106	(+)
716541.ECL_02409	(+)
716541.ECL_03003	(+)
716541.ECL_01194	(+)
716541.ECL_00512	(+)
716541.ECL_03467	(+)
716541.ECL_03650	(+)
716541.ECL_03754	(+)
716541.ECL_04407	(+)
716541.ECL_00127	(+)
716541.ECL_00124	(+)
716541.ECL_01537	(+)
716541.ECL_02622	(+)
716541.ECL_02111	(+)
716541.ECL_03097	(+)
716541.ECL_03300	(+)
716541.ECL_03574	(+)
716541.ECL_02344	(+)
716541.ECL_04701	(+)
716541.ECL_02962	(+)
716541.ECL_04041	(+)
716541.ECL_00269	(+)
716541.ECL_02230	(+)
716541.ECL_04122	(+)
716541.ECL_00468	(+)
716541.ECL_00465	(+)
716541.ECL_02432	(+)
716541.ECL_01186	(+)
716541.ECL_02507	(+)
716541.ECL_00284	(+)
716541.ECL_00048	(+)
716541.ECL_03749	(+)
716541.ECL_01669	(+)				not used
716541.ECL_00865	+
716541.ECL_01731	(+)
716541.ECL_02197	(+)
716541.ECL_01883	(+)
716541.ECL_03173	(+)
716541.ECL_02287	(+)
716541.ECL_00406	(+)
716541.ECL_02979	(+)
716541.ECL_01463	(+)
716541.ECL_00739	(+)
716541.ECL_04743	(+)
716541.ECL_04741	(+)
716541.ECL_04345	(+)
716541.ECL_00454	(+)
716541.ECL_02902	(+)
716541.ECL_02903	(+)
716541.ECL_03824	(+)
716541.ECL_02425	(+)
716541.ECL_03828	(+)
716541.ECL_03956	(+)
716541.ECL_03959	(+)
716541.ECL_04522	(+)
716541.ECL_02606	(+)
716541.ECL_02600	(+)
716541.ECL_03777	(+)
716541.ECL_02609	(+)
716541.ECL_00148	(+)				not used
716541.ECL_02778	(+)
716541.ECL_02143	(+)
716541.ECL_03552	(+)
716541.ECL_03550	(+)
716541.ECL_01894	(+)
716541.ECL_02360	(+)
716541.ECL_02361	(+)
716541.ECL_02161	(+)
716541.ECL_04916	(+)
716541.ECL_00707	(+)
716541.ECL_03011	(+)
716541.ECL_04919	(+)
716541.ECL_04756	(+)
716541.ECL_04064	(+)
716541.ECL_01846	(+)
716541.ECL_05088	(+)
716541.ECL_02567	(+)
716541.ECL_01149	(+)
716541.ECL_02568	(+)
716541.ECL_03800	(+)
716541.ECL_03801	(+)
716541.ECL_00156	(+)
716541.ECL_00155	(+)
716541.ECL_01544	(+)
716541.ECL_01540	(+)
716541.ECL_04929	(+)				not used
716541.ECL_04925	(+)
716541.ECL_03491	(+)
716541.ECL_03499	(+)
716541.ECL_04097	(+)				not used
716541.ECL_00848	(+)
716541.ECL_00842	(+)
716541.ECL_03543	(+)
716541.ECL_01711	(+)
716541.ECL_02172	(+)
716541.ECL_00620	(+)
716541.ECL_03151	(+)
716541.ECL_04613	(+)
716541.ECL_01227	(+)
716541.ECL_03986	(+)
716541.ECL_02958	(+)
716541.ECL_02392	(+)
716541.ECL_02395	(+)
716541.ECL_03317	(+)
716541.ECL_00546	(+)
716541.ECL_01067	(+)
716541.ECL_00098	(+)
716541.ECL_01573	(+)
716541.ECL_01570	(+)
716541.ECL_03992	(+)
716541.ECL_00382	(+)
716541.ECL_04802	(+)
716541.ECL_03535	(+)
716541.ECL_00255	(+)
716541.ECL_00947	(+)
716541.ECL_00250	(+)
716541.ECL_00948	(+)
716541.ECL_03302	(+)
716541.ECL_03446	(+)				not used
716541.ECL_01967	(+)
716541.ECL_00898	(+)
716541.ECL_04014	(+)
716541.ECL_02927	(+)
716541.ECL_01221	(+)
716541.ECL_02814	(+)
716541.ECL_04733	(+)
716541.ECL_02541	(+)
716541.ECL_02546	(+)
716541.ECL_02545	(+)
716541.ECL_01567	(+)
716541.ECL_00377	(+)
716541.ECL_00175	(+)
716541.ECL_03630	(+)
716541.ECL_05091	(+)
716541.ECL_02150	(+)
716541.ECL_02154	(+)
716541.ECL_02745	(+)
716541.ECL_01917	(+)
716541.ECL_03046	(+)
716541.ECL_03049	(+)
716541.ECL_02939	(+)
716541.ECL_01820	+
716541.ECL_01825	(+)
716541.ECL_01827	(+)
716541.ECL_02805	(+)
716541.ECL_04259	(+)
716541.ECL_04412	(+)
716541.ECL_04413	(+)
716541.ECL_04099	(+)
716541.ECL_04071	(+)
716541.ECL_05070	(+)
716541.ECL_04672	(+)
716541.ECL_01286	(+)
716541.ECL_02555	(+)
716541.ECL_03219	(+)
716541.ECL_00177	(+)
716541.ECL_02496	(+)
716541.ECL_01614	(+)
716541.ECL_01903	(+)
716541.ECL_00740	(+)
716541.ECL_02834	(+)
716541.ECL_03294	(+)
716541.ECL_00408	(+)				not used
716541.ECL_04080	(+)
716541.ECL_03989	(+)
716541.ECL_04065	(+)				not used
716541.ECL_05043	(+)
716541.ECL_05041	(+)
716541.ECL_01293	(+)
716541.ECL_02640	(+)
716541.ECL_04585	(+)
716541.ECL_01615	(+)
716541.ECL_01584	(+)				not used
716541.ECL_01346	(+)
716541.ECL_02901	(+)
716541.ECL_01800	(+)				not used
716541.ECL_00839	(+)
716541.ECL_04989	(+)
716541.ECL_01856	(+)
716541.ECL_04279	(+)
716541.ECL_01029	(+)
716541.ECL_04505	(+)
716541.ECL_05056	(+)				not used
716541.ECL_04691	(+)
716541.ECL_00323	(+)
716541.ECL_05128	(+)
716541.ECL_00033	(+)
716541.ECL_00035	(+)
716541.ECL_00393	(+)
716541.ECL_02481	(+)
716541.ECL_01636	(+)
716541.ECL_04376	(+)
716541.ECL_00693	(+)				not used
716541.ECL_02210	(+)
716541.ECL_01478	(+)
716541.ECL_02855	(+)				not used
716541.ECL_04288	(+)
716541.ECL_03090	(+)
716541.ECL_04264	(+)
716541.ECL_05159	(+)
716541.ECL_05157	(+)
716541.ECL_01253	(+)
716541.ECL_01467	(+)
716541.ECL_02078	(+)
716541.ECL_03426	(+)
716541.ECL_02489	(+)				not used
716541.ECL_02674	(+)
716541.ECL_01648	(+)
716541.ECL_01294	(+)
716541.ECL_01482	(+)
716541.ECL_03303	(+)
716541.ECL_00779	(+)
716541.ECL_01865	(+)
716541.ECL_04016	(+)
716541.ECL_01710	(+)
716541.ECL_03546	(+)
716541.ECL_05033	(+)
716541.ECL_04257	(+)
716541.ECL_00043	(+)
716541.ECL_02447	(+)
716541.ECL_00307	(+)
716541.ECL_05147	(+)
716541.ECL_05143	(+)
716541.ECL_02061	(+)				not used
716541.ECL_00713	(+)
716541.ECL_02666	(+)
716541.ECL_02270	(+)
716541.ECL_01072	(+)				not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.7 (7/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================