Metamenu

Effective results for Flexistipes sinusarabici DSM 4947 (eggnog40)

Summary

Number of putative secreted proteins: 99
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 99 proteins (69 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717231.Flexsi_1819(PF13429) (PF14938)ER
717231.Flexsi_1927PF01609(mitochondrial)
717231.Flexsi_0318PF01609(mitochondrial)
717231.Flexsi_0918PF01609(mitochondrial)
717231.Flexsi_1411PF01609(mitochondrial)
717231.Flexsi_1254PF01609(mitochondrial)
717231.Flexsi_0395PF01609(mitochondrial)
717231.Flexsi_0640PF01609(mitochondrial)
717231.Flexsi_1283PF05598 PF01609
717231.Flexsi_1930PF01609(mitochondrial)
717231.Flexsi_1711PF05598 PF01609
717231.Flexsi_0855PF05598 PF01609
717231.Flexsi_0147PF05598 PF01609
717231.Flexsi_0157PF01609(mitochondrial)
717231.Flexsi_1781PF05598 PF01609
717231.Flexsi_1760PF05598 PF01609
717231.Flexsi_0676PF01609(mitochondrial)
717231.Flexsi_0560PF05598 PF01609
717231.Flexsi_0561PF05598 PF01609
717231.Flexsi_2320PF05598 PF01609
717231.Flexsi_0618PF05598 PF01609
717231.Flexsi_1513PF05598 PF01609
717231.Flexsi_0770PF05598 PF01609
717231.Flexsi_2191PF01609(mitochondrial)
717231.Flexsi_0639PF05598 PF01609
717231.Flexsi_1396PF05598 PF01609
717231.Flexsi_1728PF05598 PF01609
717231.Flexsi_0723PF05598 PF01609
717231.Flexsi_1258PF05598 PF01609
717231.Flexsi_0814PF05598 PF01609
717231.Flexsi_0736PF05598 PF01609
717231.Flexsi_0733PF05598 PF01609
717231.Flexsi_2132PF05598 PF01609
717231.Flexsi_1277PF05598 PF01609
717231.Flexsi_1610PF05598 PF01609
717231.Flexsi_1044PF05598 PF01609
717231.Flexsi_1910PF05598 PF01609
717231.Flexsi_1915PF05598 PF01609
717231.Flexsi_2245PF05598 PF01609
717231.Flexsi_0055(PF12038)
717231.Flexsi_1909(PF02371)
717231.Flexsi_1907(PF01695)
717231.Flexsi_0869PF05598
717231.Flexsi_0049(PF01991)
717231.Flexsi_1335PF05598
717231.Flexsi_1807(PF03054)
717231.Flexsi_0143PF01609
717231.Flexsi_0853(PF01695)
717231.Flexsi_1925PF05598
717231.Flexsi_1929(PF01695)
717231.Flexsi_0843(PF02371)
717231.Flexsi_0026(PF01695)
717231.Flexsi_0833(PF01695)
717231.Flexsi_0543(PF13429)
717231.Flexsi_0701PF01609
717231.Flexsi_0828(PF02371)
717231.Flexsi_1998PF05598
717231.Flexsi_2085(PF03054)
717231.Flexsi_0588(PF03054)
717231.Flexsi_1988(PF02371)
717231.Flexsi_0440(PF02371)
717231.Flexsi_0779PF01609
717231.Flexsi_2046PF05598
717231.Flexsi_2192PF05598
717231.Flexsi_0349(PF02371)
717231.Flexsi_0346(PF02371)
717231.Flexsi_0295PF01609
717231.Flexsi_0740PF01609
717231.Flexsi_0290(PF00025)
717231.Flexsi_2212PF01609
717231.Flexsi_1343PF05598
717231.Flexsi_1727(PF02371)
717231.Flexsi_2298(PF02371)
717231.Flexsi_1650PF01609
717231.Flexsi_1745PF05598
717231.Flexsi_0919(PF02371)
717231.Flexsi_2281PF01609
717231.Flexsi_1861PF05598
717231.Flexsi_0436PF05598
717231.Flexsi_0927PF05598
717231.Flexsi_1705(PF01695)
717231.Flexsi_1702PF05598
717231.Flexsi_0738(PF01695)
717231.Flexsi_1066PF05598
717231.Flexsi_1262(PF02371)
717231.Flexsi_1264PF05598
717231.Flexsi_2269PF01609
717231.Flexsi_2265(PF01695)
717231.Flexsi_2266PF01609
717231.Flexsi_1849PF01609
717231.Flexsi_1743PF05598
717231.Flexsi_1077PF05598
717231.Flexsi_2257(PF02371)
717231.Flexsi_1859(PF01695)
717231.Flexsi_0718PF05598
717231.Flexsi_1448(PF02371)
717231.Flexsi_0060PF05598
717231.Flexsi_1593PF05598
717231.Flexsi_1620PF01609

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================