Metamenu

Effective results for Hyphomicrobium sp. MC1 (eggnog40)

Summary

Number of putative secreted proteins: 163
- Predicted by T4SEpre: 147
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 40 proteins (2 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717785.HYPMC_2531(PF17171) (PF17172)ER
717785.HYPMC_2792+ER
717785.HYPMC_2791+ER
717785.HYPMC_2798+ER
717785.HYPMC_4915+(mitochondrial)
717785.HYPMC_4231+(mitochondrial)
717785.HYPMC_0497+ER
717785.HYPMC_0254+ER
717785.HYPMC_0071+ER
717785.HYPMC_4166+ER
717785.HYPMC_4837+ER
717785.HYPMC_4488+ER
717785.HYPMC_4424+ER
717785.HYPMC_0800(PF01011)ER
717785.HYPMC_0809+ER
717785.HYPMC_3346+(mitochondrial)
717785.HYPMC_0485(PF01011)(ER)
717785.HYPMC_4175+ER
717785.HYPMC_4819+ER
717785.HYPMC_2400+ER
717785.HYPMC_4451+ER
717785.HYPMC_4582+(mitochondrial)
717785.HYPMC_1534+ER
717785.HYPMC_2627+(mitochondrial)
717785.HYPMC_2431+ER
717785.HYPMC_2435+mitochondrial
717785.HYPMC_3214(PF00856)(mitochondrial)
717785.HYPMC_2982+ER; (ER)
717785.HYPMC_3109+ER
717785.HYPMC_2672+ER
717785.HYPMC_0607+(mitochondrial)
717785.HYPMC_1646+(mitochondrial)
717785.HYPMC_0050+ER
717785.HYPMC_0724+ER
717785.HYPMC_2515+ER
717785.HYPMC_2994+ER
717785.HYPMC_3173+ER
717785.HYPMC_4291(PF13506)ER
717785.HYPMC_4120(PF01011)ER
717785.HYPMC_1431+ER
717785.HYPMC_3762+ER
717785.HYPMC_3764(PF13506)ER
717785.HYPMC_2016+(mitochondrial)
717785.HYPMC_0156+ER
717785.HYPMC_1939+(mitochondrial)
717785.HYPMC_2572+(mitochondrial)
717785.HYPMC_1988+(ER)
717785.HYPMC_2220+ER
717785.HYPMC_1438+ER
717785.HYPMC_4139+ER
717785.HYPMC_3741+(ER)
717785.HYPMC_4654+ER
717785.HYPMC_4643+ER
717785.HYPMC_4825+(mitochondrial)
717785.HYPMC_1596+ER
717785.HYPMC_2933(PF13506)ER
717785.HYPMC_4889+ER
717785.HYPMC_3613(PF01011)ER
717785.HYPMC_3473(PF05932)mitochondrial
717785.HYPMC_3879+ER
717785.HYPMC_1742(PF00856)mitochondrial
717785.HYPMC_1031+ER
717785.HYPMC_0315+(ER)
717785.HYPMC_3270+ER
717785.HYPMC_2687+ER
717785.HYPMC_4199+mitochondrial; (mitochondrial)
717785.HYPMC_2874+ER
717785.HYPMC_0680+ER
717785.HYPMC_0655+ER
717785.HYPMC_1497(PF01011)ER
717785.HYPMC_2653+ER
717785.HYPMC_2300+mitochondrial; (mitochondrial)
717785.HYPMC_1060(PF17171) (PF17172)
717785.HYPMC_3344+(plastid)
717785.HYPMC_0291+(plastid)
717785.HYPMC_1054(PF04519)(mitochondrial)
717785.HYPMC_2180PF13455ER
717785.HYPMC_1952(PF08857)(plastid)
717785.HYPMC_4573+(mitochondrial)
717785.HYPMC_0832+(mitochondrial)
717785.HYPMC_3912+(ER)
717785.HYPMC_0218+(mitochondrial)
717785.HYPMC_1744+(ER)
717785.HYPMC_4491+
717785.HYPMC_2793+
717785.HYPMC_3226+
717785.HYPMC_3911+
717785.HYPMC_4548+
717785.HYPMC_0486+
717785.HYPMC_0110+
717785.HYPMC_0117+
717785.HYPMC_1197(PF14216)
717785.HYPMC_3591+
717785.HYPMC_2622+
717785.HYPMC_4363+
717785.HYPMC_0479(PF13816)
717785.HYPMC_0474+
717785.HYPMC_0052+
717785.HYPMC_1234+
717785.HYPMC_2347+
717785.HYPMC_3215(PF00856)
717785.HYPMC_0918+
717785.HYPMC_0609+
717785.HYPMC_0604+
717785.HYPMC_4747+
717785.HYPMC_1087(PF04519)
717785.HYPMC_1732+
717785.HYPMC_3487(PF05932)
717785.HYPMC_3486+
717785.HYPMC_3488(PF05932)
717785.HYPMC_2973+
717785.HYPMC_0634+
717785.HYPMC_0140+
717785.HYPMC_4639+
717785.HYPMC_4759+
717785.HYPMC_2707+
717785.HYPMC_3166+
717785.HYPMC_1399+
717785.HYPMC_2178+
717785.HYPMC_4730+
717785.HYPMC_4425+
717785.HYPMC_2543(PF08857)
717785.HYPMC_2545(PF04519)
717785.HYPMC_2142+
717785.HYPMC_2720(PF02560)
717785.HYPMC_3630+
717785.HYPMC_3452(PF05932)
717785.HYPMC_0080+
717785.HYPMC_0083+
717785.HYPMC_4640(PF02689)
717785.HYPMC_2550+
717785.HYPMC_1600+
717785.HYPMC_1602(PF04519)
717785.HYPMC_2159+
717785.HYPMC_3276+
717785.HYPMC_1179+
717785.HYPMC_0569+
717785.HYPMC_0346+
717785.HYPMC_0349(PF12576)
717785.HYPMC_1852(PF04098)
717785.HYPMC_4078+
717785.HYPMC_4408+
717785.HYPMC_3187(PF05185)
717785.HYPMC_3507(PF07720)
717785.HYPMC_3476(PF05932)
717785.HYPMC_3986(PF02560)
717785.HYPMC_0965+
717785.HYPMC_0195+
717785.HYPMC_2644+
717785.HYPMC_3319(PF04120)
717785.HYPMC_0328+
717785.HYPMC_4057+
717785.HYPMC_3674+
717785.HYPMC_4046+
717785.HYPMC_1089+
717785.HYPMC_1316(PF04519)
717785.HYPMC_1262PF13455
717785.HYPMC_4324+
717785.HYPMC_4930+
717785.HYPMC_2470(PF04120)
717785.HYPMC_2213+
717785.HYPMC_3434(PF05932)
717785.HYPMC_3320(PF04120)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================