Metamenu

Effective results for Bacillus atrophaeus 1942 (eggnog40)

Summary

Number of putative secreted proteins: 201
- Predicted by T4SEpre: 231
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 25 proteins (2 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
720555.BATR1942_03000+ER
720555.BATR1942_13985+ER
720555.BATR1942_02280+ER
720555.BATR1942_20055+ER
720555.BATR1942_03215+ER
720555.BATR1942_12540+ER
720555.BATR1942_20870+ER; (ER)
720555.BATR1942_06655+ER
720555.BATR1942_17085(PF04172)ER
720555.BATR1942_15710+ER
720555.BATR1942_03595+(mitochondrial)
720555.BATR1942_07240+ER
720555.BATR1942_01745+(mitochondrial); mitochondrial
720555.BATR1942_08630+ER
720555.BATR1942_05995+ER
720555.BATR1942_19620(PF04172)ER
720555.BATR1942_20395(PF14040)ER
720555.BATR1942_02950+mitochondrial
720555.BATR1942_14805+ER
720555.BATR1942_05055+(ER)
720555.BATR1942_01225+ER
720555.BATR1942_03685(PF14040)ER
720555.BATR1942_04120+ER
720555.BATR1942_17615+ER
720555.BATR1942_18185+ER
720555.BATR1942_15050+ER
720555.BATR1942_17270+ER
720555.BATR1942_05950+ER
720555.BATR1942_02755+ER
720555.BATR1942_02680+ER
720555.BATR1942_05925+(ER); ER
720555.BATR1942_16210+(mitochondrial)
720555.BATR1942_14925+ER
720555.BATR1942_07750+ER
720555.BATR1942_00260+ER
720555.BATR1942_19535+ER
720555.BATR1942_12670+ER
720555.BATR1942_01460+ER
720555.BATR1942_03350+ER
720555.BATR1942_03740+ER
720555.BATR1942_19795+ER
720555.BATR1942_12230(PF04172)ER
720555.BATR1942_05610+mitochondrial
720555.BATR1942_15130(PF00386)mitochondrial; (mitochondrial)
720555.BATR1942_14475+ER
720555.BATR1942_02625+ER; (ER)
720555.BATR1942_20950+ER
720555.BATR1942_00095+ER
720555.BATR1942_11955+(ER); (mitochondrial)
720555.BATR1942_12950+ER
720555.BATR1942_01575+ER
720555.BATR1942_15425+ER
720555.BATR1942_05125+ER
720555.BATR1942_09290+(mitochondrial)
720555.BATR1942_02600+ER; (ER)
720555.BATR1942_13440+ER; (mitochondrial)
720555.BATR1942_18525+mitochondrial
720555.BATR1942_19760+ER
720555.BATR1942_08715+ER
720555.BATR1942_13355+ER
720555.BATR1942_01565PF05978ER
720555.BATR1942_11680+ER
720555.BATR1942_14510+ER
720555.BATR1942_17875+(mitochondrial)
720555.BATR1942_14420+ER
720555.BATR1942_20265(PF09683)ER
720555.BATR1942_01405+ER
720555.BATR1942_01550+(ER)
720555.BATR1942_16195+(ER)
720555.BATR1942_11490PF03215(mitochondrial)
720555.BATR1942_11010+(mitochondrial)
720555.BATR1942_10815+(ER)
720555.BATR1942_01240(PF03407)(mitochondrial)
720555.BATR1942_05140+(mitochondrial)
720555.BATR1942_14480+(mitochondrial)
720555.BATR1942_13115(PF12606)ER; not used
720555.BATR1942_20455+(plastid)
720555.BATR1942_15655+(ER)
720555.BATR1942_01040+(mitochondrial)
720555.BATR1942_13430+(mitochondrial)
720555.BATR1942_08565+
720555.BATR1942_02085+
720555.BATR1942_19690+
720555.BATR1942_01760+
720555.BATR1942_15760+
720555.BATR1942_17895+
720555.BATR1942_00100+
720555.BATR1942_08355+
720555.BATR1942_02525+
720555.BATR1942_16590+
720555.BATR1942_08765+
720555.BATR1942_05860+
720555.BATR1942_09745+
720555.BATR1942_05675+
720555.BATR1942_03440+
720555.BATR1942_10270+
720555.BATR1942_07690+
720555.BATR1942_17890+
720555.BATR1942_09750+
720555.BATR1942_17525+
720555.BATR1942_13260+
720555.BATR1942_05060+
720555.BATR1942_01525(PF01487)
720555.BATR1942_08700+
720555.BATR1942_02090+
720555.BATR1942_07200+
720555.BATR1942_12525+
720555.BATR1942_07975+
720555.BATR1942_07375(PF03098)
720555.BATR1942_07370(PF03098)
720555.BATR1942_20005(PF05225)
720555.BATR1942_04955+
720555.BATR1942_01830+
720555.BATR1942_13275+
720555.BATR1942_10140+
720555.BATR1942_08255+
720555.BATR1942_18275+
720555.BATR1942_16095+
720555.BATR1942_14830+
720555.BATR1942_20520+
720555.BATR1942_01250(PF03407)
720555.BATR1942_18805+
720555.BATR1942_18460+
720555.BATR1942_17110(PF04172)not used
720555.BATR1942_16885+
720555.BATR1942_15280+
720555.BATR1942_00585(PF08271)
720555.BATR1942_04140(PF14748)
720555.BATR1942_16215+
720555.BATR1942_12515+
720555.BATR1942_18925+
720555.BATR1942_09495+
720555.BATR1942_04340+
720555.BATR1942_04435+
720555.BATR1942_04170+
720555.BATR1942_12810+
720555.BATR1942_03505+
720555.BATR1942_07155+
720555.BATR1942_03510+
720555.BATR1942_12315+
720555.BATR1942_08810+
720555.BATR1942_12695+
720555.BATR1942_07330(PF14748)
720555.BATR1942_18935+
720555.BATR1942_01640+
720555.BATR1942_00190+
720555.BATR1942_03640+
720555.BATR1942_02915+
720555.BATR1942_10885+
720555.BATR1942_13555+
720555.BATR1942_01100(PF09224)
720555.BATR1942_12995+
720555.BATR1942_00430+
720555.BATR1942_10205(PF14748)
720555.BATR1942_08920+
720555.BATR1942_19245+
720555.BATR1942_18575+
720555.BATR1942_17800+
720555.BATR1942_18900+
720555.BATR1942_05915+
720555.BATR1942_06505+
720555.BATR1942_13540+
720555.BATR1942_20425+
720555.BATR1942_08795+
720555.BATR1942_03995+
720555.BATR1942_18620+
720555.BATR1942_06475+
720555.BATR1942_13575+
720555.BATR1942_04885+
720555.BATR1942_17130+
720555.BATR1942_08085+
720555.BATR1942_00700+
720555.BATR1942_20895+
720555.BATR1942_08890+
720555.BATR1942_05920+
720555.BATR1942_06395+
720555.BATR1942_04720+
720555.BATR1942_05410+
720555.BATR1942_10540+
720555.BATR1942_11120(PF14748)
720555.BATR1942_12025+
720555.BATR1942_20930(PF00477)
720555.BATR1942_16500+
720555.BATR1942_16870+
720555.BATR1942_17275+
720555.BATR1942_08590+
720555.BATR1942_09090+
720555.BATR1942_15925+
720555.BATR1942_03015+
720555.BATR1942_12310+
720555.BATR1942_10880+
720555.BATR1942_16640+
720555.BATR1942_09020+
720555.BATR1942_13690+
720555.BATR1942_14645+
720555.BATR1942_09420(PF01487)
720555.BATR1942_09425+
720555.BATR1942_18080+
720555.BATR1942_18085+
720555.BATR1942_05650+
720555.BATR1942_03950+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================