Effective results for Pseudomonas fluorescens WH6 (eggnog40)

Summary

Number of putative secreted proteins: 812
- Predicted by EffectiveT3: 255 (high confidence), 375 (low confidence)
- Predicted by EffectiveCCBD: 20 within, 14 before, 40 behind expected region 25..70aa
- Predicted by T4SEpre: 106
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 61 proteins (2 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
746360.PFWH6_2638				(PF14686) (PF09284) (PF14683)	ER
746360.PFWH6_2511		+	+		ER
746360.PFWH6_4702		+	+		ER
746360.PFWH6_2773			+		ER
746360.PFWH6_4244		(>)			(mitochondrial); mitochondrial
746360.PFWH6_1685		(>)			ER
746360.PFWH6_3791				(PF02366)	ER
746360.PFWH6_2225		(>)			mitochondrial; (mitochondrial)
746360.PFWH6_3507	+				(mitochondrial); plastid
746360.PFWH6_1238			+		ER
746360.PFWH6_2677			+		ER
746360.PFWH6_1557		(>)			ER
746360.PFWH6_0979	+				(ER); (plastid)
746360.PFWH6_0766			+		ER
746360.PFWH6_0502				(PF06293)	ER
746360.PFWH6_3503				(PF00199)	ER
746360.PFWH6_4418		+			ER
746360.PFWH6_2244		(<)			ER
746360.PFWH6_1299			+		ER
746360.PFWH6_0521			+		mitochondrial
746360.PFWH6_5565			+		ER
746360.PFWH6_4167		(>)			ER
746360.PFWH6_5041			+		(ER)
746360.PFWH6_5718		+			ER
746360.PFWH6_0092		(<)			ER
746360.PFWH6_3012		+			ER
746360.PFWH6_3900			+		ER
746360.PFWH6_3221			+		(mitochondrial)
746360.PFWH6_0876			+		ER
746360.PFWH6_5340		+			ER
746360.PFWH6_2597		+			ER
746360.PFWH6_0839	+				(mitochondrial); (plastid)
746360.PFWH6_5308	+				(mitochondrial); plastid
746360.PFWH6_1825			+		ER
746360.PFWH6_5670				(PF14539)	mitochondrial; (mitochondrial)
746360.PFWH6_3845			+		ER
746360.PFWH6_0067			+		ER
746360.PFWH6_0386			+		(mitochondrial)
746360.PFWH6_2742	+				mitochondrial; (mitochondrial)
746360.PFWH6_5166	+				(mitochondrial); plastid
746360.PFWH6_1162		(>)			(mitochondrial)
746360.PFWH6_3108		+			ER
746360.PFWH6_1882		(<)			ER
746360.PFWH6_2765				(PF02366)	ER
746360.PFWH6_5232		+			mitochondrial
746360.PFWH6_5230			+		ER
746360.PFWH6_3375				(PF06884)	ER
746360.PFWH6_3169	+				mitochondrial; (mitochondrial)
746360.PFWH6_0710		+			ER
746360.PFWH6_3788				(PF02366)	ER
746360.PFWH6_4925			+		ER; (ER)
746360.PFWH6_1205				(PF00182)	mitochondrial; plastid
746360.PFWH6_0556			+		(mitochondrial)
746360.PFWH6_2958	+				ER
746360.PFWH6_0948			+		ER
746360.PFWH6_1978			+		mitochondrial
746360.PFWH6_1793			+		ER; (ER)
746360.PFWH6_0518		(>)			ER; (ER)
746360.PFWH6_2002		(>)			ER
746360.PFWH6_0230			+		ER
746360.PFWH6_2279				(PF05189)	(mitochondrial)
746360.PFWH6_3518			+		(mitochondrial)
746360.PFWH6_3043			+		ER
746360.PFWH6_3703			+		ER
746360.PFWH6_1934		(>)			(mitochondrial)
746360.PFWH6_2409	+				(ER); (mitochondrial)
746360.PFWH6_3725			+		ER
746360.PFWH6_4353		(>)			ER
746360.PFWH6_1864				(PF00199)	ER
746360.PFWH6_0848	+				(mitochondrial)
746360.PFWH6_4676	+				ER; (ER)
746360.PFWH6_4695		(<)			ER
746360.PFWH6_2330			+		ER
746360.PFWH6_2594				(PF06945)	(mitochondrial); mitochondrial
746360.PFWH6_5649		(>)			ER
746360.PFWH6_1486			+		(ER)
746360.PFWH6_2867		(>)			(ER)
746360.PFWH6_2534		(>)			(mitochondrial)
746360.PFWH6_2807				(PF00199)	ER
746360.PFWH6_2827			+		(mitochondrial)
746360.PFWH6_2752			+		ER
746360.PFWH6_5082				(PF00199)	(ER)
746360.PFWH6_3367	+			(PF10685)	not used
746360.PFWH6_3366	(+)		+	(PF10685)
746360.PFWH6_1538	(+)				(mitochondrial); (plastid)
746360.PFWH6_4472	+			(PF02133)
746360.PFWH6_3173	+			(PF01400)
746360.PFWH6_3171	+				plastid
746360.PFWH6_2559	+				(ER)
746360.PFWH6_1942	+				(plastid)
746360.PFWH6_3329	(+)				(mitochondrial)
746360.PFWH6_5499	(+)				(ER)
746360.PFWH6_2482	+				plastid
746360.PFWH6_5936	(+)				mitochondrial
746360.PFWH6_4035	(+)				ER
746360.PFWH6_3508	(+)				mitochondrial
746360.PFWH6_5730	+			(PF06945)
746360.PFWH6_2391	(+)				(mitochondrial); (plastid)
746360.PFWH6_2381	(+)				mitochondrial; (mitochondrial)
746360.PFWH6_0550	+		+
746360.PFWH6_3906			+		(ER)
746360.PFWH6_4363	(+)				ER
746360.PFWH6_1622	(+)				ER
746360.PFWH6_3227	+				(plastid)
746360.PFWH6_0879		(<)	+
746360.PFWH6_3033			+		(ER)
746360.PFWH6_3692	+				plastid
746360.PFWH6_5830	(+)				(ER)
746360.PFWH6_5833	+				(plastid)
746360.PFWH6_1187	(+)				ER
746360.PFWH6_0300	+				(plastid)
746360.PFWH6_0302	(+)				(mitochondrial)
746360.PFWH6_4309	+				(mitochondrial)
746360.PFWH6_2117	+				(mitochondrial)
746360.PFWH6_4512	+				plastid
746360.PFWH6_5584		+	+
746360.PFWH6_1225	+				(plastid)
746360.PFWH6_3848				(PF01400)	(plastid)
746360.PFWH6_4709	(+)				(mitochondrial); (plastid)
746360.PFWH6_5691		+			(ER)
746360.PFWH6_1105	+	+
746360.PFWH6_5135	+				(mitochondrial)
746360.PFWH6_1109	+				(plastid)
746360.PFWH6_5178	+		+
746360.PFWH6_3105			+		(ER)
746360.PFWH6_2509	(+)				ER; (ER)
746360.PFWH6_0693	(+)				(mitochondrial); plastid
746360.PFWH6_1260	+	(>)
746360.PFWH6_2979				(PF14539)	(plastid)
746360.PFWH6_1522		(>)			(ER)
746360.PFWH6_5785	+				(mitochondrial)
746360.PFWH6_2556	(+)				(ER); ER
746360.PFWH6_4076				(PF14539)	(plastid)
746360.PFWH6_3312	(+)				mitochondrial; (mitochondrial)
746360.PFWH6_1044	+		+
746360.PFWH6_1045	+				(plastid)
746360.PFWH6_1567		(>)		(PF06293)
746360.PFWH6_4424	+			(PF02133)
746360.PFWH6_0212	+				(plastid)
746360.PFWH6_2009	+				plastid
746360.PFWH6_0003	(+)				(mitochondrial)
746360.PFWH6_0542	+		+
746360.PFWH6_3215	(+)				ER
746360.PFWH6_3006	+				(ER)
746360.PFWH6_3008	(+)				ER
746360.PFWH6_2358	+				(plastid)
746360.PFWH6_4355	+				(plastid)
746360.PFWH6_1644	(+)				(mitochondrial)
746360.PFWH6_3335				(PF02366)	plastid
746360.PFWH6_0751	+			(PF03692)
746360.PFWH6_3020	(+)				ER
746360.PFWH6_4205	+				plastid
746360.PFWH6_4204	(+)	+			(plastid)
746360.PFWH6_5264	+			(PF00199)
746360.PFWH6_1445	(+)				(mitochondrial); plastid
746360.PFWH6_4678	+	(>)
746360.PFWH6_5803	(+)		+		(plastid)
746360.PFWH6_3754		(>)	+
746360.PFWH6_0394			+		(mitochondrial)
746360.PFWH6_1745	+				(mitochondrial)
746360.PFWH6_1170	(+)				(mitochondrial)
746360.PFWH6_3600	(+)				mitochondrial
746360.PFWH6_1843	+
746360.PFWH6_0824	+
746360.PFWH6_2666	+
746360.PFWH6_4493	+
746360.PFWH6_5168	+
746360.PFWH6_4567	+
746360.PFWH6_3132	+
746360.PFWH6_3646	+
746360.PFWH6_2514	+
746360.PFWH6_1092	(+)				(plastid)
746360.PFWH6_2771	+
746360.PFWH6_2777		+
746360.PFWH6_4915		(<)
746360.PFWH6_4913	(+)	(<)
746360.PFWH6_5209	+
746360.PFWH6_5154	+
746360.PFWH6_3123	+
746360.PFWH6_3124	+
746360.PFWH6_0053	+
746360.PFWH6_4881		(>)
746360.PFWH6_3832	+
746360.PFWH6_3345		(>)
746360.PFWH6_3365	(+)				(plastid)
746360.PFWH6_3362	+
746360.PFWH6_3360	+
746360.PFWH6_2987	+
746360.PFWH6_0506			+
746360.PFWH6_0605	+
746360.PFWH6_1515	+
746360.PFWH6_4151			+
746360.PFWH6_3115	(+)				plastid
746360.PFWH6_2575	+				not used
746360.PFWH6_2571			+
746360.PFWH6_1072	(+)				(plastid)
746360.PFWH6_4245	(+)				(plastid)
746360.PFWH6_4068	+
746360.PFWH6_2133	+
746360.PFWH6_1687			+
746360.PFWH6_1534	(+)				(ER)
746360.PFWH6_0486	(+)				(plastid)
746360.PFWH6_3178	+
746360.PFWH6_4037	+
746360.PFWH6_5029	(+)				ER; not used
746360.PFWH6_1059				(PF05971)
746360.PFWH6_5244	(+)		+
746360.PFWH6_1943	+
746360.PFWH6_1944	+
746360.PFWH6_0832	+
746360.PFWH6_2903	+
746360.PFWH6_2941	+
746360.PFWH6_2948		(<)
746360.PFWH6_2949		+
746360.PFWH6_3327	(+)		+
746360.PFWH6_3150	+
746360.PFWH6_4894	+
746360.PFWH6_3824	+
746360.PFWH6_3825	+
746360.PFWH6_3354	+
746360.PFWH6_2075	+
746360.PFWH6_0993	+
746360.PFWH6_0190	+
746360.PFWH6_0220	+
746360.PFWH6_0228	+
746360.PFWH6_4096				(PF03538)
746360.PFWH6_2267	+
746360.PFWH6_5067	(+)				(ER)
746360.PFWH6_1018	+
746360.PFWH6_5069	+
746360.PFWH6_4888	+				not used
746360.PFWH6_4084	+
746360.PFWH6_0500				(PF06293)
746360.PFWH6_0501				(PF06293)
746360.PFWH6_5204	+
746360.PFWH6_5205	+
746360.PFWH6_4146			+
746360.PFWH6_0526		(>)
746360.PFWH6_0523				(PF02133)
746360.PFWH6_3923	+
746360.PFWH6_3922	+
746360.PFWH6_3929	+
746360.PFWH6_2038				(PF02133)
746360.PFWH6_4389	+
746360.PFWH6_4163	+
746360.PFWH6_0266	+
746360.PFWH6_3719				(PF02133)
746360.PFWH6_2025	+
746360.PFWH6_1416	+
746360.PFWH6_4595		(<)
746360.PFWH6_4599	+
746360.PFWH6_4598	+
746360.PFWH6_4629	+				not used
746360.PFWH6_1292			+
746360.PFWH6_1628	+
746360.PFWH6_0280	+
746360.PFWH6_3734	+
746360.PFWH6_3735	+
746360.PFWH6_3738	+
746360.PFWH6_2171	+
746360.PFWH6_2174		(>)
746360.PFWH6_5779	(+)				(plastid)
746360.PFWH6_5190	+
746360.PFWH6_5195			+
746360.PFWH6_4640				(PF06945)
746360.PFWH6_3037	+
746360.PFWH6_2618	+
746360.PFWH6_2619			+
746360.PFWH6_4346	+
746360.PFWH6_4349			+
746360.PFWH6_5831	+
746360.PFWH6_2441			+
746360.PFWH6_5640			+
746360.PFWH6_2156	+
746360.PFWH6_2153				PF13816
746360.PFWH6_2152				PF13816
746360.PFWH6_5758	+
746360.PFWH6_5756	(+)			(PF03692)
746360.PFWH6_1185	+
746360.PFWH6_4808	+
746360.PFWH6_1494	+
746360.PFWH6_5324		(<)
746360.PFWH6_4326	+
746360.PFWH6_4327	+
746360.PFWH6_0131	+
746360.PFWH6_5815	(+)				(plastid)
746360.PFWH6_5810	+
746360.PFWH6_3437		(<)
746360.PFWH6_3432	+
746360.PFWH6_0886			+
746360.PFWH6_4308	+
746360.PFWH6_4304	+
746360.PFWH6_1141		+
746360.PFWH6_1492				(PF03692)
746360.PFWH6_4511	+
746360.PFWH6_4515		(>)
746360.PFWH6_4517	+
746360.PFWH6_0363	(+)				(mitochondrial)
746360.PFWH6_3185			+
746360.PFWH6_3459	(+)		+
746360.PFWH6_3988		(<)			not used
746360.PFWH6_2580	+
746360.PFWH6_5678			+
746360.PFWH6_5675	+
746360.PFWH6_5673	+
746360.PFWH6_1771	+				not used
746360.PFWH6_0176			+
746360.PFWH6_4724	+
746360.PFWH6_5455	(+)		+
746360.PFWH6_3843	+
746360.PFWH6_1160	+
746360.PFWH6_4538			+
746360.PFWH6_0696	+
746360.PFWH6_0347	+
746360.PFWH6_5531	+
746360.PFWH6_5617			+
746360.PFWH6_1776	+
746360.PFWH6_4503	+
746360.PFWH6_4507	+
746360.PFWH6_0682	+
746360.PFWH6_3867	+
746360.PFWH6_1636	+
746360.PFWH6_5133	+
746360.PFWH6_4555	+
746360.PFWH6_5415	+
746360.PFWH6_0419	+
746360.PFWH6_3675	+
746360.PFWH6_3678	+
746360.PFWH6_0890		(>)
746360.PFWH6_3496	+
746360.PFWH6_2721			+
746360.PFWH6_4763	+
746360.PFWH6_1127			+
746360.PFWH6_1381	+
746360.PFWH6_1201	+				not used
746360.PFWH6_3504		(>)
746360.PFWH6_0383	+
746360.PFWH6_3657	+
746360.PFWH6_2748	+
746360.PFWH6_4296	+
746360.PFWH6_4291		+
746360.PFWH6_4746				(PF06293)
746360.PFWH6_4781	+
746360.PFWH6_4789				(PF06945)	not used
746360.PFWH6_3829	(+)				(plastid)
746360.PFWH6_2995	+
746360.PFWH6_5179	+
746360.PFWH6_3103		+
746360.PFWH6_5845	+
746360.PFWH6_1085	+
746360.PFWH6_1086	+
746360.PFWH6_4015	+
746360.PFWH6_5068	(+)		+
746360.PFWH6_3371	+
746360.PFWH6_3374	+
746360.PFWH6_2978				(PF14539)
746360.PFWH6_1698	+
746360.PFWH6_0928	+
746360.PFWH6_4461	+
746360.PFWH6_4466		(>)
746360.PFWH6_1060	(+)			(PF05971)
746360.PFWH6_4075			+
746360.PFWH6_0558			+
746360.PFWH6_3578	(+)				(mitochondrial)
746360.PFWH6_3313	+				not used
746360.PFWH6_2954	(+)				(ER)
746360.PFWH6_0639	+
746360.PFWH6_0630	+
746360.PFWH6_0631		(>)
746360.PFWH6_0942	+
746360.PFWH6_0499				(PF06293)
746360.PFWH6_4447	(+)			(PF03692)
746360.PFWH6_2231	+
746360.PFWH6_2237	(+)				(mitochondrial); not used
746360.PFWH6_0790		(>)
746360.PFWH6_4278				(PF02133)
746360.PFWH6_0798	+
746360.PFWH6_1952				(PF02133)
746360.PFWH6_3083	(+)				(mitochondrial)
746360.PFWH6_3554	(+)				(plastid)
746360.PFWH6_1565	+
746360.PFWH6_0969				(PF03692)
746360.PFWH6_4422			+
746360.PFWH6_2210				(PF02133)
746360.PFWH6_4212	+				not used
746360.PFWH6_4213	(+)				(mitochondrial)
746360.PFWH6_5929	+
746360.PFWH6_2910	+				not used
746360.PFWH6_2914	+
746360.PFWH6_1581	+
746360.PFWH6_4158		(>)
746360.PFWH6_1870	(+)				(plastid)
746360.PFWH6_1872	+
746360.PFWH6_0870	(+)				(plastid)
746360.PFWH6_3895				(PF00182)
746360.PFWH6_2492		(<)
746360.PFWH6_2542	+
746360.PFWH6_0755	+
746360.PFWH6_1914	+
746360.PFWH6_4099	(+)			(PF12255)
746360.PFWH6_1245	+
746360.PFWH6_4170			+
746360.PFWH6_4179	(+)				(plastid)
746360.PFWH6_0255	+
746360.PFWH6_0250		(>)
746360.PFWH6_4797	+
746360.PFWH6_4271	(+)			(PF02133)
746360.PFWH6_2853	+
746360.PFWH6_4792	+
746360.PFWH6_3467		+
746360.PFWH6_0736	+
746360.PFWH6_0732		(>)
746360.PFWH6_1427	+
746360.PFWH6_0575		(>)
746360.PFWH6_4614	+
746360.PFWH6_4615			+
746360.PFWH6_3394			+
746360.PFWH6_3395	+
746360.PFWH6_2625	+
746360.PFWH6_2627	+
746360.PFWH6_3932	+
746360.PFWH6_5576	+
746360.PFWH6_0270	+
746360.PFWH6_2615	+
746360.PFWH6_3722	+
746360.PFWH6_5767	+
746360.PFWH6_5763			+
746360.PFWH6_0865	(+)		+
746360.PFWH6_3009	+
746360.PFWH6_5374	+
746360.PFWH6_4415	+
746360.PFWH6_4135		(>)
746360.PFWH6_0293	+
746360.PFWH6_5523	+
746360.PFWH6_2166	+
746360.PFWH6_4839		(>)
746360.PFWH6_1466	+
746360.PFWH6_0597	(+)		+
746360.PFWH6_3022	+
746360.PFWH6_3685				(PF00199)
746360.PFWH6_2376			+
746360.PFWH6_2372	(+)				(mitochondrial)
746360.PFWH6_3979	+
746360.PFWH6_5683			+
746360.PFWH6_2082	(+)				plastid
746360.PFWH6_2880	+
746360.PFWH6_1034	+
746360.PFWH6_4335	+
746360.PFWH6_1033		(>)
746360.PFWH6_5820	+
746360.PFWH6_4202	+
746360.PFWH6_5260			+
746360.PFWH6_3762		(>)
746360.PFWH6_3764	+
746360.PFWH6_2412		(>)
746360.PFWH6_2411	+
746360.PFWH6_1192	(+)			(PF00182)
746360.PFWH6_4675			+
746360.PFWH6_2311				(PF05277)
746360.PFWH6_3952			+
746360.PFWH6_1839	+
746360.PFWH6_1838	+
746360.PFWH6_1834	+
746360.PFWH6_5801	+
746360.PFWH6_5894	+
746360.PFWH6_0648	(+)				(mitochondrial); not used
746360.PFWH6_2125	+
746360.PFWH6_2121	(+)		+
746360.PFWH6_2436			+
746360.PFWH6_4877	+
746360.PFWH6_4872	+
746360.PFWH6_0801	+
746360.PFWH6_4692		(>)
746360.PFWH6_0374				(PF02133)
746360.PFWH6_3422				(PF10685)
746360.PFWH6_4992	(+)	(>)
746360.PFWH6_1763	+
746360.PFWH6_1851	+
746360.PFWH6_4739	+
746360.PFWH6_2100			+
746360.PFWH6_4851			+
746360.PFWH6_1372				(PF03692)
746360.PFWH6_1373	+
746360.PFWH6_1370	+
746360.PFWH6_1371	+
746360.PFWH6_0359				(PF03692)
746360.PFWH6_3194	(+)			(PF06945)
746360.PFWH6_3196	+
746360.PFWH6_2712	+				not used
746360.PFWH6_1023	+
746360.PFWH6_0325	+
746360.PFWH6_5849	+
746360.PFWH6_0164	+
746360.PFWH6_4713	+
746360.PFWH6_2531		(>)
746360.PFWH6_2532	+
746360.PFWH6_3877		(<)
746360.PFWH6_3874	+
746360.PFWH6_5431	(+)				(plastid)
746360.PFWH6_0407			+
746360.PFWH6_0406			+
746360.PFWH6_5527	+
746360.PFWH6_2803	(+)				(plastid)
746360.PFWH6_4823	+
746360.PFWH6_1723	+
746360.PFWH6_1704	+
746360.PFWH6_5416	+
746360.PFWH6_1118	+
746360.PFWH6_0070	(+)			(PF00199)
746360.PFWH6_2820	+
746360.PFWH6_0074	+
746360.PFWH6_4816	(+)
746360.PFWH6_3347	(+)
746360.PFWH6_1130	(+)
746360.PFWH6_3131	(+)
746360.PFWH6_1896	(+)
746360.PFWH6_1093	(+)
746360.PFWH6_2770	(+)
746360.PFWH6_5208	(+)
746360.PFWH6_0056	(+)
746360.PFWH6_2837	(+)
746360.PFWH6_2183	(+)
746360.PFWH6_2982	+
746360.PFWH6_1512	(+)				not used
746360.PFWH6_1513	(+)
746360.PFWH6_4400	(+)
746360.PFWH6_3112	(+)
746360.PFWH6_5228	(+)
746360.PFWH6_1216	(+)
746360.PFWH6_4249	(+)
746360.PFWH6_4243	(+)
746360.PFWH6_0038	(+)
746360.PFWH6_4062	(+)
746360.PFWH6_1710	(+)
746360.PFWH6_0667	(+)
746360.PFWH6_2961	(+)
746360.PFWH6_0047	(+)
746360.PFWH6_3797	(+)
746360.PFWH6_3798	(+)
746360.PFWH6_2553	(+)
746360.PFWH6_2552	(+)
746360.PFWH6_2224	(+)
746360.PFWH6_3057	(+)
746360.PFWH6_1949	(+)
746360.PFWH6_0543	(+)
746360.PFWH6_2906	(+)
746360.PFWH6_3549	(+)
746360.PFWH6_2943	(+)
746360.PFWH6_5495	(+)
746360.PFWH6_1554	(+)
746360.PFWH6_3154	(+)				not used
746360.PFWH6_4209	(+)
746360.PFWH6_5266	(+)
746360.PFWH6_0565	(+)
746360.PFWH6_4234	(+)
746360.PFWH6_5912	(+)
746360.PFWH6_3523	(+)
746360.PFWH6_3522	(+)
746360.PFWH6_2070	(+)
746360.PFWH6_2071	(+)
746360.PFWH6_2077	(+)
746360.PFWH6_0994	+
746360.PFWH6_4097	(+)
746360.PFWH6_2487	(+)
746360.PFWH6_1010	(+)
746360.PFWH6_4220	(+)
746360.PFWH6_4031	(+)
746360.PFWH6_5935	(+)				not used
746360.PFWH6_2900	(+)
746360.PFWH6_2016	(+)
746360.PFWH6_0246	(+)
746360.PFWH6_5656	(+)
746360.PFWH6_3260	(+)
746360.PFWH6_3266	(+)
746360.PFWH6_3511	(+)
746360.PFWH6_1925	(+)
746360.PFWH6_1928	(+)
746360.PFWH6_1437	(+)
746360.PFWH6_0522	(+)
746360.PFWH6_0808	(+)
746360.PFWH6_3075	(+)
746360.PFWH6_3073	(+)
746360.PFWH6_2383	(+)
746360.PFWH6_2657	(+)
746360.PFWH6_5566	(+)
746360.PFWH6_4386	(+)
746360.PFWH6_4381	(+)
746360.PFWH6_4160	(+)
746360.PFWH6_0370	(+)
746360.PFWH6_0097	(+)
746360.PFWH6_1291	(+)
746360.PFWH6_2636	(+)
746360.PFWH6_5360	(+)
746360.PFWH6_0527	(+)
746360.PFWH6_3229	(+)
746360.PFWH6_3226	(+)
746360.PFWH6_5776	(+)
746360.PFWH6_5193	(+)
746360.PFWH6_1475	(+)
746360.PFWH6_1470	(+)
746360.PFWH6_4643	(+)
746360.PFWH6_4642	(+)
746360.PFWH6_2612	(+)
746360.PFWH6_3964	(+)
746360.PFWH6_4348	(+)
746360.PFWH6_4123	(+)
746360.PFWH6_2114	(+)
746360.PFWH6_3206	(+)
746360.PFWH6_3208	(+)
746360.PFWH6_2407	(+)
746360.PFWH6_4800	(+)
746360.PFWH6_0850	(+)
746360.PFWH6_1459	(+)
746360.PFWH6_0586	(+)
746360.PFWH6_4840	(+)
746360.PFWH6_4662	(+)
746360.PFWH6_4661	(+)
746360.PFWH6_2366	(+)
746360.PFWH6_2095	(+)
746360.PFWH6_2895	(+)
746360.PFWH6_1664	(+)
746360.PFWH6_0132	(+)				not used
746360.PFWH6_5813	(+)
746360.PFWH6_3770	(+)
746360.PFWH6_2131	(+)
746360.PFWH6_1605	(+)
746360.PFWH6_0308	(+)
746360.PFWH6_3434	(+)
746360.PFWH6_3431	(+)				not used
746360.PFWH6_3439	(+)
746360.PFWH6_5659	(+)
746360.PFWH6_0885	(+)
746360.PFWH6_5655	(+)
746360.PFWH6_1824	(+)
746360.PFWH6_0150	(+)
746360.PFWH6_5872	(+)
746360.PFWH6_3637	(+)
746360.PFWH6_0369	(+)
746360.PFWH6_3184	(+)
746360.PFWH6_3182	(+)
746360.PFWH6_2588	(+)
746360.PFWH6_4984	(+)
746360.PFWH6_4067	(+)				not used
746360.PFWH6_3842	(+)
746360.PFWH6_5449	(+)
746360.PFWH6_1806	(+)
746360.PFWH6_4533	(+)
746360.PFWH6_0060	(+)
746360.PFWH6_2871	(+)
746360.PFWH6_2875	(+)
746360.PFWH6_3474	(+)
746360.PFWH6_0683	(+)
746360.PFWH6_1752	(+)
746360.PFWH6_1753	(+)
746360.PFWH6_0174	(+)
746360.PFWH6_0421	(+)
746360.PFWH6_3864	(+)
746360.PFWH6_5425	(+)
746360.PFWH6_1102	(+)
746360.PFWH6_4559	(+)
746360.PFWH6_3642	(+)
746360.PFWH6_3494	(+)
746360.PFWH6_5634	(+)
746360.PFWH6_5094	(+)
746360.PFWH6_5093	(+)				not used
746360.PFWH6_4942	(+)
746360.PFWH6_4891	(+)
746360.PFWH6_5404	(+)
746360.PFWH6_4578	(+)
746360.PFWH6_1387	(+)
746360.PFWH6_1386	(+)
746360.PFWH6_1380	(+)
746360.PFWH6_0387	(+)
746360.PFWH6_3127	(+)
746360.PFWH6_2526	(+)
746360.PFWH6_3350	(+)
746360.PFWH6_3821	(+)
746360.PFWH6_2191	(+)
746360.PFWH6_2992	(+)
746360.PFWH6_2999	(+)
746360.PFWH6_0670	(+)
746360.PFWH6_1884	(+)
746360.PFWH6_3372	(+)
746360.PFWH6_2971	(+)
746360.PFWH6_2973	(+)
746360.PFWH6_3162	(+)
746360.PFWH6_1053	(+)
746360.PFWH6_2048	(+)
746360.PFWH6_1048	(+)
746360.PFWH6_4049	(+)
746360.PFWH6_3081	(+)
746360.PFWH6_2682	(+)
746360.PFWH6_2680	(+)
746360.PFWH6_5487	(+)
746360.PFWH6_1563	(+)
746360.PFWH6_4420	(+)
746360.PFWH6_2351	(+)
746360.PFWH6_1028	(+)
746360.PFWH6_0872	(+)
746360.PFWH6_3270	(+)
746360.PFWH6_2273	(+)
746360.PFWH6_2235	(+)
746360.PFWH6_4232	(+)
746360.PFWH6_3042	(+)
746360.PFWH6_3046	(+)
746360.PFWH6_3045	(+)
746360.PFWH6_2649	(+)
746360.PFWH6_2640	(+)
746360.PFWH6_2029	(+)
746360.PFWH6_2028	(+)
746360.PFWH6_0251	(+)
746360.PFWH6_2258	(+)
746360.PFWH6_2259	(+)
746360.PFWH6_1220	(+)
746360.PFWH6_1937	(+)
746360.PFWH6_0731	(+)
746360.PFWH6_0571	(+)
746360.PFWH6_3391	(+)
746360.PFWH6_3931	(+)
746360.PFWH6_3939	(+)
746360.PFWH6_5570	(+)
746360.PFWH6_5580	(+)
746360.PFWH6_4375	(+)
746360.PFWH6_4112	(+)
746360.PFWH6_5137	(+)
746360.PFWH6_5765	(+)
746360.PFWH6_5764	(+)				not used
746360.PFWH6_5183	(+)
746360.PFWH6_5189	(+)
746360.PFWH6_0864	(+)
746360.PFWH6_4583	(+)
746360.PFWH6_4359	(+)
746360.PFWH6_4351	(+)
746360.PFWH6_1877	(+)
746360.PFWH6_1156	(+)
746360.PFWH6_1658	(+)
746360.PFWH6_2933	(+)
746360.PFWH6_3211	(+)
746360.PFWH6_0331	(+)
746360.PFWH6_0334	(+)
746360.PFWH6_4651	(+)
746360.PFWH6_3028	(+)
746360.PFWH6_3021	(+)
746360.PFWH6_3683	(+)
746360.PFWH6_2087	(+)
746360.PFWH6_2089	(+)
746360.PFWH6_4337	(+)
746360.PFWH6_4338	(+)
746360.PFWH6_5828	(+)
746360.PFWH6_4207	(+)
746360.PFWH6_4203	(+)
746360.PFWH6_1964	(+)
746360.PFWH6_3769	(+)
746360.PFWH6_2149	(+)
746360.PFWH6_1996	(+)
746360.PFWH6_1196	(+)
746360.PFWH6_1197	(+)
746360.PFWH6_4810	(+)
746360.PFWH6_1338	(+)
746360.PFWH6_4671	(+)
746360.PFWH6_1835	(+)
746360.PFWH6_0120	(+)
746360.PFWH6_0122	(+)
746360.PFWH6_0124	(+)
746360.PFWH6_5806	(+)
746360.PFWH6_5897	(+)
746360.PFWH6_0649	(+)
746360.PFWH6_2431	(+)
746360.PFWH6_2432	(+)				not used
746360.PFWH6_5474	(+)
746360.PFWH6_5479	(+)				not used
746360.PFWH6_4876	(+)
746360.PFWH6_1761	(+)
746360.PFWH6_1670	(+)
746360.PFWH6_3853	(+)
746360.PFWH6_5101	(+)
746360.PFWH6_0685	(+)
746360.PFWH6_3623	(+)				not used
746360.PFWH6_3625	(+)
746360.PFWH6_2861	(+)
746360.PFWH6_3993	(+)
746360.PFWH6_2719	(+)
746360.PFWH6_5599	(+)
746360.PFWH6_4710	(+)
746360.PFWH6_4719	(+)
746360.PFWH6_4718	(+)
746360.PFWH6_5052	(+)
746360.PFWH6_3299	(+)
746360.PFWH6_1975	(+)
746360.PFWH6_2530	(+)
746360.PFWH6_1977	(+)
746360.PFWH6_2533	(+)
746360.PFWH6_2473	(+)
746360.PFWH6_4529	(+)
746360.PFWH6_1352	(+)
746360.PFWH6_5408	(+)
746360.PFWH6_3609	(+)
746360.PFWH6_3461	(+)
746360.PFWH6_5605	(+)
746360.PFWH6_4955	(+)
746360.PFWH6_4956	(+)
746360.PFWH6_1721	(+)
746360.PFWH6_5143	(+)
746360.PFWH6_0641	(+)
746360.PFWH6_0469	(+)
746360.PFWH6_0467	(+)
746360.PFWH6_2759	(+)
746360.PFWH6_2750	(+)
746360.PFWH6_5084	(+)
746360.PFWH6_1253	(+)
746360.PFWH6_1709	(+)
746360.PFWH6_4757	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.2 (12/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.75 (22/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================