Effective results for Aromatoleum aromaticum EbN1 (eggnog40)

Summary

Number of putative secreted proteins: 150
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 150 proteins (73 high, 77 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
76114.c1A74PF01609 (PF05598)ER
76114.ebA7152(PF08022) (PF01794)ER
76114.ebA4977(PF08022) (PF01794)ER
76114.ebA3186(PF08022) (PF01794)ER
76114.c2A227PF01695mitochondrial; (mitochondrial)
76114.ebA4629(PF06884)ER
76114.ebA2666PF01695mitochondrial; (mitochondrial)
76114.ebA1004PF09459ER
76114.ebA2123PF01695mitochondrial; (mitochondrial)
76114.ebA2604PF01609mitochondrial
76114.ebA2594(PF01794)ER
76114.ebA5242PF01695mitochondrial; (mitochondrial)
76114.ebA5498PF01695mitochondrial; (mitochondrial)
76114.ebA826(PF03092)(mitochondrial)
76114.ebA3337(PF00665)mitochondrial
76114.ebA70PF01695mitochondrial; (mitochondrial)
76114.ebA5341PF01695mitochondrial; (mitochondrial)
76114.ebA788PF01695mitochondrial; (mitochondrial)
76114.ebA270PF01695(ER)
76114.ebA5171(PF14870)ER
76114.ebA1929(PF14870)ER; (ER)
76114.ebA5948PF01695mitochondrial; (mitochondrial)
76114.ebA293PF01695mitochondrial; (mitochondrial)
76114.ebA2485(PF00665)(mitochondrial)
76114.c2A225(PF00665)(mitochondrial)
76114.ebA2667(PF00665)(mitochondrial)
76114.ebA6587(PF00665)(mitochondrial)
76114.ebA634(PF00665)(mitochondrial)
76114.ebA630PF01609 (PF05598)
76114.ebA1557PF01609 (PF05598)
76114.ebA2478PF01609 (PF05598)
76114.ebA2124(PF00665)(mitochondrial)
76114.ebA6779(PF00665)(mitochondrial)
76114.ebA573PF01609 (PF05598)
76114.ebA6342(PF00665)(mitochondrial)
76114.ebA199PF01695(mitochondrial)
76114.ebA200(PF00665)(mitochondrial)
76114.ebA4272PF01609 (PF05598)
76114.ebA329(PF14870)plastid
76114.ebA3243PF01609 (PF05598)
76114.ebA72(PF00665)(mitochondrial)
76114.ebA5342(PF00665)(mitochondrial)
76114.ebA787(PF00665)(mitochondrial)
76114.ebA5506(PF00665)(mitochondrial)
76114.ebA4935(PF00665)(mitochondrial)
76114.ebA3138(PF01977)(mitochondrial)
76114.ebA279PF01609 (PF05598)
76114.ebA6199PF01609 (PF05598)
76114.ebA3270PF01609 (PF05598)
76114.ebA466(PF00665)(mitochondrial)
76114.ebA1354(PF00665)(mitochondrial)
76114.ebA5947(PF00665)(mitochondrial)
76114.ebA292(PF00665)(mitochondrial)
76114.ebA2008(PF00665)(mitochondrial)
76114.ebA2009PF01695(mitochondrial)
76114.ebA3199PF01609 (PF05598)
76114.ebA3227PF01609 (PF05598)
76114.ebA2672(PF00665)(mitochondrial)
76114.ebA5241(PF00665)(mitochondrial)
76114.ebA5598(PF09361)
76114.ebA2484PF01695
76114.ebA2669(PF00665)
76114.ebA385(PF03050)
76114.ebA6347PF01695
76114.ebA6345PF01695
76114.ebA6763(PF00665)
76114.ebA897PF01609
76114.ebA4437(PF00665)
76114.ebA633PF01695
76114.ebA4984(PF12513)
76114.ebA569PF01609
76114.ebA5114PF01609
76114.c1A92(PF14870)
76114.ebA1948(PF03050)not used
76114.ebA5649(PF01977)
76114.ebA575PF01609
76114.ebA5244(PF02171)
76114.ebA2286(PF01977)
76114.ebA6343(PF00665)
76114.ebA364(PF00665)
76114.ebA366PF01695
76114.ebA3781PF01695
76114.ebA763PF01695
76114.ebA765(PF00665)
76114.ebA5496(PF00665)
76114.ebA5492(PF03050)
76114.ebA3141(PF01977)
76114.ebA6765PF01695
76114.ebD98PF01609not used
76114.ebA208PF01695
76114.ebA204(PF00665)
76114.ebA2853(PF00665)
76114.ebA3777(PF00665)
76114.ebA690(PF03050)
76114.ebA4705(PF14870)
76114.ebA5523(PF03050)
76114.c1A62PF09459
76114.ebA358PF01609
76114.ebA3344(PF00665)
76114.ebA688PF01609
76114.ebB14PF01609
76114.ebA2771(PF09361)
76114.ebA5514PF01695
76114.ebA6355PF01609
76114.ebA3336PF01609not used
76114.ebA3338PF01695
76114.ebA4927PF01609
76114.ebA4928(PF05598)
76114.ebA75PF01609
76114.ebA99PF01609
76114.ebA5033(PF09361)
76114.ebA5346PF01609not used
76114.ebA5507PF01609
76114.ebA6086PF01609
76114.ebA6668(PF09361)
76114.ebA4933PF01609
76114.ebD30(PF05598)
76114.ebA84PF01609
76114.ebA2758(PF16155)
76114.ebA3134(PF01977)
76114.ebA5563(PF00665)
76114.ebA5561PF01695
76114.ebA3277(PF00665)
76114.ebA3279PF01695
76114.ebA1323(PF09361)
76114.ebA5771PF01609
76114.ebA269(PF00665)
76114.ebA261PF01609
76114.ebA5793PF09459
76114.ebA2680PF01695
76114.ebA6852(PF09361)
76114.ebA859(PF03050)
76114.ebA1353PF01695
76114.ebB165PF10712
76114.ebA5764(PF14870)
76114.ebA290(PF03050)
76114.ebA5786PF01609
76114.ebA452(PF03050)
76114.ebA2013PF01695
76114.ebA3214(PF03050)
76114.ebA1544(PF03050)
76114.ebA5932(PF00665)
76114.ebA2007(PF00665)
76114.ebA4306PF01609
76114.c2A230(PF03050)
76114.ebA3989PF01609
76114.ebA2673PF01609
76114.ebA7204PF01609
76114.ebA3230PF01609
76114.ebA78PF01609

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================