Metamenu

Effective results for Oscillochloris trichoides DG-6 (eggnog40)

Summary

Number of putative secreted proteins: 226
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 226 proteins (17 high, 209 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
765420.OSCT_0910(PF13415) PF03415ER
765420.OSCT_0917PF11790ER
765420.OSCT_2284(PF00092)ER
765420.OSCT_1340(PF00092)ER
765420.OSCT_0769(PF01095)ER
765420.OSCT_0768(PF01095)ER
765420.OSCT_0650(PF01040)ER
765420.OSCT_2467(PF13185)ER; (ER)
765420.OSCT_3220PF12483ER
765420.OSCT_1750(PF13231)ER
765420.OSCT_2067(PF01040)ER
765420.OSCT_0802(PF13439)ER
765420.OSCT_1507(PF16317)ER
765420.OSCT_0028(PF13439)(ER); (plastid)
765420.OSCT_2888(PF07678)ER
765420.OSCT_0745(PF00092)ER
765420.OSCT_3107(PF01040)ER
765420.OSCT_0034(PF01740)ER
765420.OSCT_2933(PF00498)ER
765420.OSCT_0265(PF13185)ER
765420.OSCT_3065(PF01740)ER
765420.OSCT_1833(PF16158)ER
765420.OSCT_1318(PF13439)mitochondrial
765420.OSCT_0273(PF01073)(mitochondrial); mitochondrial
765420.OSCT_0272(PF01740)ER
765420.OSCT_0274(PF00498)ER
765420.OSCT_3098(PF13439)mitochondrial; (ER)
765420.OSCT_0467(PF14684)ER
765420.OSCT_1257(PF13185)ER
765420.OSCT_2683(PF02374)mitochondrial
765420.OSCT_1818(PF13231)ER
765420.OSCT_1810(PF00092)ER
765420.OSCT_2904(PF01740)mitochondrial
765420.OSCT_2691(PF13185)ER
765420.OSCT_1804(PF13439)mitochondrial
765420.OSCT_2346PF03209(mitochondrial)
765420.OSCT_2340(PF13439)(mitochondrial); (plastid)
765420.OSCT_2111(PF02374)mitochondrial; (plastid)
765420.OSCT_1273(PF06925)(mitochondrial)
765420.OSCT_2976(PF01078)ER
765420.OSCT_0223(PF13231)ER
765420.OSCT_2758(PF13231)ER
765420.OSCT_2371(PF13231)ER
765420.OSCT_2574(PF12773)ER
765420.OSCT_2218(PF13185)ER
765420.OSCT_2108(PF02844) (PF02843)(ER)
765420.OSCT_1616PF11790ER
765420.OSCT_1590(PF01740)ER
765420.OSCT_1281(PF13231)ER
765420.OSCT_2587(PF13231)ER
765420.OSCT_1131(PF01040)(mitochondrial)
765420.OSCT_0887(PF00498) PF03415(plastid)
765420.OSCT_3198(PF13231)ER
765420.OSCT_2172PF11790ER
765420.OSCT_0437(PF01740)ER
765420.OSCT_0896PF03209mitochondrial
765420.OSCT_1922(PF13231)ER
765420.OSCT_2167(PF13185)(mitochondrial)
765420.OSCT_0395(PF02374)mitochondrial
765420.OSCT_1098(PF13231)ER; (ER)
765420.OSCT_1097(PF13231)ER
765420.OSCT_1090(PF00498)ER
765420.OSCT_1091(PF01040)(ER)
765420.OSCT_1363(PF01740)mitochondrial
765420.OSCT_1164(PF12770)(ER)
765420.OSCT_1949PF12483ER
765420.OSCT_2444(PF13231)ER
765420.OSCT_2445(PF13231)ER
765420.OSCT_1766(PF01740)ER; (ER)
765420.OSCT_0389(PF13185)ER
765420.OSCT_1083(PF02374)(mitochondrial)
765420.OSCT_1084(PF02374)mitochondrial; (mitochondrial)
765420.OSCT_1089(PF12773)ER
765420.OSCT_1088(PF02374)(mitochondrial); mitochondrial
765420.OSCT_1178(PF13231)ER
765420.OSCT_0770(PF01095)ER
765420.OSCT_0772(PF14684)mitochondrial
765420.OSCT_2041(PF13439)(mitochondrial)
765420.OSCT_1182(PF12773) (PF00498)
765420.OSCT_2728(PF00092)(plastid)
765420.OSCT_1354(PF11965)(mitochondrial)
765420.OSCT_3059(PF13439)(plastid)
765420.OSCT_0246(PF00092) (PF01078)
765420.OSCT_2679(PF12773) (PF00498)
765420.OSCT_2678(PF00092)(plastid)
765420.OSCT_3205(PF13439)(mitochondrial)
765420.OSCT_3204(PF13579)(ER)
765420.OSCT_1230(PF13185)(ER)
765420.OSCT_1532(PF13185) (PF13492)
765420.OSCT_1310(PF13185)(mitochondrial)
765420.OSCT_0479(PF13439)(plastid)
765420.OSCT_0470(PF12770) (PF12894)
765420.OSCT_2342(PF01078)plastid
765420.OSCT_1276(PF13579)(mitochondrial)
765420.OSCT_1468(PF13579)(mitochondrial)
765420.OSCT_0523(PF13185) (PF13492)
765420.OSCT_2542(PF02844) (PF02843)
765420.OSCT_1932(PF13185) (PF13492)
765420.OSCT_0393(PF01740)(ER)
765420.OSCT_0378(PF00092)plastid
765420.OSCT_2623(PF13439)(ER)
765420.OSCT_3007(PF00498) (PF13492)
765420.OSCT_0360(PF11965)(mitochondrial)
765420.OSCT_1953(PF13185) (PF13492)
765420.OSCT_0915(PF12770)
765420.OSCT_0911(PF12770)
765420.OSCT_2046PF00847
765420.OSCT_0592(PF01740)
765420.OSCT_0596(PF13231)
765420.OSCT_0597(PF13231)
765420.OSCT_1185(PF14684)
765420.OSCT_2604(PF13185)
765420.OSCT_1960(PF13439)
765420.OSCT_1402(PF12770)
765420.OSCT_2980(PF13185)
765420.OSCT_2985(PF13492)
765420.OSCT_0580(PF12770)
765420.OSCT_2727(PF00498)
765420.OSCT_1352(PF13185)
765420.OSCT_1356PF03209
765420.OSCT_1976(PF01073)
765420.OSCT_0626(PF13579)
765420.OSCT_1998(PF13231)
765420.OSCT_2081(PF12770)
765420.OSCT_2885PF00847
765420.OSCT_1215(PF01078)
765420.OSCT_0339(PF00498)
765420.OSCT_0637(PF01078)
765420.OSCT_2092(PF13185)
765420.OSCT_0032(PF01740)
765420.OSCT_2898(PF13439)
765420.OSCT_2896(PF13439)
765420.OSCT_1208(PF12894)
765420.OSCT_1201(PF12770)
765420.OSCT_2674(PF00498)
765420.OSCT_1028(PF14572)
765420.OSCT_0645(PF01740)
765420.OSCT_0648(PF13185)
765420.OSCT_1686(PF13579)
765420.OSCT_2304(PF13185)
765420.OSCT_0869(PF13439)
765420.OSCT_0133(PF14572)
765420.OSCT_0011(PF13439)
765420.OSCT_2934(PF00498)
765420.OSCT_1237(PF01740)
765420.OSCT_1233(PF13492)
765420.OSCT_2641(PF13185)
765420.OSCT_2423PF00847
765420.OSCT_2339(PF00498)
765420.OSCT_2252(PF02933)
765420.OSCT_0872(PF13439)
765420.OSCT_0121(PF14572)
765420.OSCT_2656(PF13185)
765420.OSCT_3091PF12315
765420.OSCT_3097(PF01740)
765420.OSCT_2437(PF01740)
765420.OSCT_2468(PF13579)
765420.OSCT_0460(PF13185)
765420.OSCT_0680(PF06925)
765420.OSCT_0061(PF12770)
765420.OSCT_1499(PF12770)
765420.OSCT_1076(PF01040)
765420.OSCT_0514(PF13439)
765420.OSCT_0679(PF06925)
765420.OSCT_1482(PF00643)
765420.OSCT_1062(PF13185)
765420.OSCT_0218(PF00025)
765420.OSCT_0214(PF13492)
765420.OSCT_1117(PF13185)
765420.OSCT_2692(PF01740)
765420.OSCT_2206(PF13185)
765420.OSCT_1660PF03209
765420.OSCT_2977(PF13185)
765420.OSCT_0222(PF13185)
765420.OSCT_1295(PF01740)
765420.OSCT_1053(PF12770)
765420.OSCT_2755(PF01040)
765420.OSCT_0453(PF01740)
765420.OSCT_2373(PF00498)
765420.OSCT_1905(PF12770)
765420.OSCT_3186(PF12770)
765420.OSCT_1722(PF01740)
765420.OSCT_1266(PF12770)
765420.OSCT_1262(PF13439)
765420.OSCT_2960(PF09445)
765420.OSCT_2812PF03209
765420.OSCT_2369(PF01040)
765420.OSCT_1914PF03415
765420.OSCT_1609(PF13439)
765420.OSCT_1601(PF00092)
765420.OSCT_0232(PF12770)
765420.OSCT_2824(PF13579)
765420.OSCT_1859(PF12770)
765420.OSCT_2557(PF00025)
765420.OSCT_2552(PF13185)
765420.OSCT_0890(PF01040)
765420.OSCT_1638(PF01419)
765420.OSCT_2839(PF13439)
765420.OSCT_2831(PF13185)
765420.OSCT_2947(PF13439)
765420.OSCT_1150(PF13185)
765420.OSCT_3018(PF13439)
765420.OSCT_1935(PF13185)
765420.OSCT_3170(PF12770)
765420.OSCT_1626(PF11965)
765420.OSCT_1621(PF13439)
765420.OSCT_1712(PF13185)
765420.OSCT_1715(PF13439)
765420.OSCT_2849(PF13185)
765420.OSCT_0392(PF16184)
765420.OSCT_1942(PF12773)
765420.OSCT_2442(PF13231)
765420.OSCT_2443(PF13579)
765420.OSCT_3147(PF13185)
765420.OSCT_1761(PF13439)
765420.OSCT_1762(PF13439)
765420.OSCT_1398(PF12770)
765420.OSCT_1393(PF00498)
765420.OSCT_0386(PF00498)
765420.OSCT_2703(PF13492)
765420.OSCT_2701(PF13439)
765420.OSCT_1370(PF16184)
765420.OSCT_1375(PF12770)
765420.OSCT_2630(PF13185)
765420.OSCT_2520(PF13185)
765420.OSCT_1951(PF12770)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================