Effective results for Calditerrivibrio nitroreducens DSM 19672 (eggnog40)

Summary

Number of putative secreted proteins: 24
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 24 proteins (2 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
768670.Calni_1149				PF03414	ER
768670.Calni_0848				(PF00079)	ER
768670.Calni_1096				(PF13638)	ER
768670.Calni_0853				(PF00079)	ER
768670.Calni_0126				(PF02516)	ER
768670.Calni_0740				(PF08011) (PF09820)
768670.Calni_1692				(PF08011) (PF09820)
768670.Calni_1682				(PF08011) (PF09820)
768670.Calni_2020				(PF08011) (PF09820)
768670.Calni_0224				(PF08011) (PF09820)
768670.Calni_2030				(PF08011) (PF09820)
768670.Calni_1960				(PF08011) (PF09820)
768670.Calni_1407				(PF08011) (PF09820)
768670.Calni_0913				(PF08011) (PF09820)
768670.Calni_1855				(PF08011) (PF09820)
768670.Calni_0028				(PF08011) (PF09820)
768670.Calni_1925				(PF08011) (PF09820)
768670.Calni_0319				(PF01535)
768670.Calni_0225				PF04981
768670.Calni_1376				(PF00025)
768670.Calni_1625				(PF13638)
768670.Calni_0948				(PF02475)
768670.Calni_1843				(PF12646)
768670.Calni_1742				(PF13638)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================