Effective results for Streptococcus mitis bv. 2 str. F0392 (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
768726.HMPREF9178_1403			+		ER
768726.HMPREF9178_0249			+		(mitochondrial)
768726.HMPREF9178_0808			+		ER
768726.HMPREF9178_0929			+		ER
768726.HMPREF9178_1332			+		ER
768726.HMPREF9178_0137			+		ER
768726.HMPREF9178_1781				(PF00344)	mitochondrial
768726.HMPREF9178_0667			+		ER
768726.HMPREF9178_0512				(PF04991)	(ER)
768726.HMPREF9178_0848			+		mitochondrial
768726.HMPREF9178_0685			+		(ER)
768726.HMPREF9178_0670			+		(mitochondrial); (plastid)
768726.HMPREF9178_1246			+		ER; (ER)
768726.HMPREF9178_0221			+		mitochondrial
768726.HMPREF9178_1472				(PF00344)	mitochondrial
768726.HMPREF9178_1908			+		ER
768726.HMPREF9178_0989				PF04103	ER
768726.HMPREF9178_1265			+		ER
768726.HMPREF9178_1132			+		(mitochondrial)
768726.HMPREF9178_1857			+		ER
768726.HMPREF9178_1639				(PF03644)	(mitochondrial)
768726.HMPREF9178_0946				PF02916	ER
768726.HMPREF9178_1276			+		mitochondrial; (mitochondrial)
768726.HMPREF9178_1561			+		ER
768726.HMPREF9178_1761				(PF03083)	ER
768726.HMPREF9178_1399			+		ER
768726.HMPREF9178_0167			+		ER
768726.HMPREF9178_0169			+		ER
768726.HMPREF9178_0168			+		ER
768726.HMPREF9178_1828				(PF01633)	(mitochondrial)
768726.HMPREF9178_1793			+		plastid
768726.HMPREF9178_1591				(PF08975)	(mitochondrial)
768726.HMPREF9178_1553			+		(mitochondrial)
768726.HMPREF9178_0909			+
768726.HMPREF9178_0837			+
768726.HMPREF9178_1577			+
768726.HMPREF9178_1355			+
768726.HMPREF9178_1212			+
768726.HMPREF9178_0105			+
768726.HMPREF9178_0321			+
768726.HMPREF9178_0633			+
768726.HMPREF9178_0638			+
768726.HMPREF9178_0256			+
768726.HMPREF9178_1513			+
768726.HMPREF9178_1907			+
768726.HMPREF9178_1833			+
768726.HMPREF9178_1788			+
768726.HMPREF9178_1306			+
768726.HMPREF9178_1018			+
768726.HMPREF9178_0491			+
768726.HMPREF9178_1792			+
768726.HMPREF9178_1799			+
768726.HMPREF9178_1002			+
768726.HMPREF9178_0469			+
768726.HMPREF9178_0510				(PF04991)
768726.HMPREF9178_0755			+
768726.HMPREF9178_1675			+
768726.HMPREF9178_0509				(PF04991)
768726.HMPREF9178_1062				(PF12949)
768726.HMPREF9178_0046			+
768726.HMPREF9178_0224			+
768726.HMPREF9178_0227				(PF06414)
768726.HMPREF9178_1477			+
768726.HMPREF9178_1471			+
768726.HMPREF9178_1278			+
768726.HMPREF9178_1585				(PF06414)
768726.HMPREF9178_1299			+
768726.HMPREF9178_0239			+
768726.HMPREF9178_1598			+
768726.HMPREF9178_1047			+
768726.HMPREF9178_0884			+
768726.HMPREF9178_0896			+
768726.HMPREF9178_1714			+
768726.HMPREF9178_0577			+
768726.HMPREF9178_1439			+
768726.HMPREF9178_1894			+
768726.HMPREF9178_1540			+
768726.HMPREF9178_0145				(PF01633)
768726.HMPREF9178_0738			+
768726.HMPREF9178_1427				(PF03083)
768726.HMPREF9178_1372			+
768726.HMPREF9178_0926			+
768726.HMPREF9178_0177			+
768726.HMPREF9178_0595			+
768726.HMPREF9178_0196			+
768726.HMPREF9178_1962			+
768726.HMPREF9178_1317			+
768726.HMPREF9178_1762			+
768726.HMPREF9178_0160			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================