Metamenu

Effective results for Vibrio caribbeanicus ATCC BAA-2122 (eggnog40)

Summary

Number of putative secreted proteins: 603
- Predicted by EffectiveT3: 170 (high confidence), 253 (low confidence)
- Predicted by EffectiveCCBD: 35 within, 26 before, 69 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 76 proteins (43 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
796620.VIBC2010_10227PF14564 (PF08964)ER
796620.VIBC2010_08298(PF00657)ER
796620.VIBC2010_16294PF03382ER
796620.VIBC2010_04824(PF00657)ER
796620.VIBC2010_17255+ER
796620.VIBC2010_02633PF03382ER
796620.VIBC2010_09867(>)mitochondrial; ER
796620.VIBC2010_09862(PF03724)ER
796620.VIBC2010_01428(>)ER
796620.VIBC2010_13546(PF17186)ER
796620.VIBC2010_04584PF01150(ER)
796620.VIBC2010_06854(>)ER
796620.VIBC2010_10122(PF08180)ER
796620.VIBC2010_02511(PF00080)ER
796620.VIBC2010_09457+ER
796620.VIBC2010_08922+ER
796620.VIBC2010_12394(>)ER
796620.VIBC2010_08033+mitochondrial
796620.VIBC2010_13571+ER
796620.VIBC2010_11994(>)mitochondrial
796620.VIBC2010_11849PF16683ER
796620.VIBC2010_02616(>)ER
796620.VIBC2010_02506(PF00080)ER
796620.VIBC2010_18379+ER
796620.VIBC2010_09687+ER; (ER)
796620.VIBC2010_07079+(mitochondrial); plastid
796620.VIBC2010_09832(>)ER
796620.VIBC2010_14824PF10563ER
796620.VIBC2010_06649(<)ER
796620.VIBC2010_14584PF03382ER; (ER)
796620.VIBC2010_07719(PF03724)ER
796620.VIBC2010_12699+ER
796620.VIBC2010_19195(>)ER
796620.VIBC2010_17934(>)ER
796620.VIBC2010_17029+ER
796620.VIBC2010_03220PF01117(ER)
796620.VIBC2010_14599PF03382ER
796620.VIBC2010_05119(>)ER
796620.VIBC2010_13336(>)mitochondrial
796620.VIBC2010_03215PF01117ER
796620.VIBC2010_06224+ER
796620.VIBC2010_13286(PF04862)(ER)
796620.VIBC2010_05309(>)ER
796620.VIBC2010_09577PF03382ER; (ER)
796620.VIBC2010_18910+ER
796620.VIBC2010_14614PF03382ER
796620.VIBC2010_15899(PF13582)ER
796620.VIBC2010_14054+ER; (ER)
796620.VIBC2010_08763(PF05932)(ER)
796620.VIBC2010_01233(>)ER; (ER)
796620.VIBC2010_17634+ER
796620.VIBC2010_16304(PF00657)ER
796620.VIBC2010_08408(>)ER
796620.VIBC2010_12499(>)mitochondrial
796620.VIBC2010_17809(PF13582)ER
796620.VIBC2010_16319+(mitochondrial)
796620.VIBC2010_03622+(ER)
796620.VIBC2010_16794+ER
796620.VIBC2010_08398+ER
796620.VIBC2010_08543(>)ER
796620.VIBC2010_11774(PF00080)ER
796620.VIBC2010_15324(PF03724)ER
796620.VIBC2010_08393(PF00657)ER
796620.VIBC2010_15459+mitochondrial; (mitochondrial)
796620.VIBC2010_12074(>)ER
796620.VIBC2010_16034(<)ER
796620.VIBC2010_06524+(<)(plastid)
796620.VIBC2010_09637(PF17186)ER
796620.VIBC2010_09327(<)ER
796620.VIBC2010_08897+(mitochondrial); (plastid)
796620.VIBC2010_17694(<)(mitochondrial)
796620.VIBC2010_01633(>)ER
796620.VIBC2010_20115+(mitochondrial)
796620.VIBC2010_13719(>)ER
796620.VIBC2010_14619(+)PF03382(ER)
796620.VIBC2010_09242+ER
796620.VIBC2010_06844+ER
796620.VIBC2010_17450(>)(mitochondrial)
796620.VIBC2010_02945(<)ER
796620.VIBC2010_09872(PF03724)ER
796620.VIBC2010_14604PF03382(mitochondrial)
796620.VIBC2010_05159+(ER)
796620.VIBC2010_11824(+)(ER); (plastid)
796620.VIBC2010_11609(+)(ER)
796620.VIBC2010_08593+
796620.VIBC2010_17075+plastid
796620.VIBC2010_19950(>)(mitochondrial)
796620.VIBC2010_04904+plastid
796620.VIBC2010_09677(+)mitochondrial; (mitochondrial)
796620.VIBC2010_18384+(plastid)
796620.VIBC2010_01898(>)(ER)
796620.VIBC2010_12154+(mitochondrial)
796620.VIBC2010_04022++
796620.VIBC2010_17470(+)ER
796620.VIBC2010_07139+(plastid)
796620.VIBC2010_00854(+)(mitochondrial)
796620.VIBC2010_10132+(>)
796620.VIBC2010_03802(+)(ER)
796620.VIBC2010_16409(+)(mitochondrial)
796620.VIBC2010_03752(+)(>)(plastid)
796620.VIBC2010_15514(+)ER
796620.VIBC2010_14339(+)ER
796620.VIBC2010_14589PF03382(mitochondrial)
796620.VIBC2010_08807+plastid
796620.VIBC2010_00020(+)(ER)
796620.VIBC2010_07899+plastid
796620.VIBC2010_08817+(plastid)
796620.VIBC2010_14759++
796620.VIBC2010_15799(+)mitochondrial; (mitochondrial)
796620.VIBC2010_16354(+)ER
796620.VIBC2010_17854(+)ER
796620.VIBC2010_10866(+)mitochondrial; (mitochondrial)
796620.VIBC2010_03932+plastid
796620.VIBC2010_19060+PF03382
796620.VIBC2010_11251(>)(ER)
796620.VIBC2010_14574(+)ER
796620.VIBC2010_15229(+)ER
796620.VIBC2010_03637+(plastid)
796620.VIBC2010_08753+(plastid)
796620.VIBC2010_12906+plastid
796620.VIBC2010_19980+(plastid)
796620.VIBC2010_11684+(>)
796620.VIBC2010_04884(+)ER
796620.VIBC2010_12916+plastid
796620.VIBC2010_12911+plastid
796620.VIBC2010_03617+(ER)
796620.VIBC2010_01373+(plastid)
796620.VIBC2010_00350(+)mitochondrial
796620.VIBC2010_06384(+)mitochondrial; (mitochondrial)
796620.VIBC2010_18254(+)(ER); ER
796620.VIBC2010_14999(+)ER
796620.VIBC2010_17390+(mitochondrial)
796620.VIBC2010_02073+(ER)
796620.VIBC2010_00884+(plastid)
796620.VIBC2010_17285(+)ER
796620.VIBC2010_09287+(ER)
796620.VIBC2010_01203+
796620.VIBC2010_19565+not used
796620.VIBC2010_12554(>)
796620.VIBC2010_16384PF00644
796620.VIBC2010_01383+
796620.VIBC2010_13954(+)(<)
796620.VIBC2010_01388+
796620.VIBC2010_17744+not used
796620.VIBC2010_03872+
796620.VIBC2010_03877(+)(plastid)
796620.VIBC2010_18985+
796620.VIBC2010_13171+
796620.VIBC2010_20160+
796620.VIBC2010_06604(>)
796620.VIBC2010_07229(>)
796620.VIBC2010_13603PF03382
796620.VIBC2010_05895(+)PF03382
796620.VIBC2010_08847+
796620.VIBC2010_08118+
796620.VIBC2010_19170+
796620.VIBC2010_01938+
796620.VIBC2010_12414+
796620.VIBC2010_12419+
796620.VIBC2010_12896(>)
796620.VIBC2010_16734+
796620.VIBC2010_04769+
796620.VIBC2010_07239+
796620.VIBC2010_16209(>)
796620.VIBC2010_07839(PF10013)not used
796620.VIBC2010_10012+not used
796620.VIBC2010_06055(>)
796620.VIBC2010_18564(>)
796620.VIBC2010_19765(<)
796620.VIBC2010_09217PF03382not used
796620.VIBC2010_08857+
796620.VIBC2010_18164+
796620.VIBC2010_14399+
796620.VIBC2010_15537PF03382
796620.VIBC2010_03817(+)+
796620.VIBC2010_04339+
796620.VIBC2010_16389+
796620.VIBC2010_04027(+)(plastid)
796620.VIBC2010_17624(<)
796620.VIBC2010_13111(>)
796620.VIBC2010_10956+
796620.VIBC2010_10007PF03382not used
796620.VIBC2010_07554+
796620.VIBC2010_04274+
796620.VIBC2010_06664(>)
796620.VIBC2010_07919+
796620.VIBC2010_11999+
796620.VIBC2010_11441+
796620.VIBC2010_03105+
796620.VIBC2010_05489+
796620.VIBC2010_06084+
796620.VIBC2010_11664+
796620.VIBC2010_14724+
796620.VIBC2010_11266+
796620.VIBC2010_05189+
796620.VIBC2010_17480+
796620.VIBC2010_15747+
796620.VIBC2010_00445PF03382not used
796620.VIBC2010_03807(>)
796620.VIBC2010_13366+
796620.VIBC2010_01663+
796620.VIBC2010_08827+
796620.VIBC2010_10926(<)
796620.VIBC2010_00620+
796620.VIBC2010_17040PF03382not used
796620.VIBC2010_13744+
796620.VIBC2010_10037+
796620.VIBC2010_02990+
796620.VIBC2010_03025+
796620.VIBC2010_01333+
796620.VIBC2010_02755+
796620.VIBC2010_11071+
796620.VIBC2010_14649PF03382not used
796620.VIBC2010_16904(+)(mitochondrial)
796620.VIBC2010_08123(+)(mitochondrial)
796620.VIBC2010_15607+
796620.VIBC2010_16894+
796620.VIBC2010_15174(<)
796620.VIBC2010_08498+
796620.VIBC2010_12194+
796620.VIBC2010_03837PF03382not used
796620.VIBC2010_04489PF03382
796620.VIBC2010_16659(+)+
796620.VIBC2010_13136(<)
796620.VIBC2010_14844+
796620.VIBC2010_07664(PF03318)
796620.VIBC2010_10846+
796620.VIBC2010_07934(+)PF03382
796620.VIBC2010_12649+
796620.VIBC2010_14034(PF10014)
796620.VIBC2010_05324+
796620.VIBC2010_14369+not used
796620.VIBC2010_14969+
796620.VIBC2010_01263+
796620.VIBC2010_15164+
796620.VIBC2010_19040(>)
796620.VIBC2010_16084+
796620.VIBC2010_01863+
796620.VIBC2010_19465(<)
796620.VIBC2010_01513(+)(>)
796620.VIBC2010_16869(>)
796620.VIBC2010_17050+not used
796620.VIBC2010_03917+
796620.VIBC2010_16139(PF10014)
796620.VIBC2010_20260(<)
796620.VIBC2010_10696+
796620.VIBC2010_07279+
796620.VIBC2010_12831+
796620.VIBC2010_13650(+)(>)
796620.VIBC2010_02083(+)(ER)
796620.VIBC2010_03772(>)
796620.VIBC2010_19725PF03382not used
796620.VIBC2010_08812+not used
796620.VIBC2010_11256PF03382not used
796620.VIBC2010_14374+
796620.VIBC2010_10711(+)(mitochondrial)
796620.VIBC2010_18834(>)
796620.VIBC2010_11066+
796620.VIBC2010_19050(<)
796620.VIBC2010_07429+
796620.VIBC2010_10377+
796620.VIBC2010_01458(PF05932)
796620.VIBC2010_01453+
796620.VIBC2010_16679(PF01786)
796620.VIBC2010_16694(+)(ER)
796620.VIBC2010_16524(+)(plastid)
796620.VIBC2010_20300(PF03901)
796620.VIBC2010_12294(<)
796620.VIBC2010_08688+
796620.VIBC2010_06354(>)
796620.VIBC2010_03145(>)
796620.VIBC2010_09977+
796620.VIBC2010_05830PF03382not used
796620.VIBC2010_18139+
796620.VIBC2010_19665+
796620.VIBC2010_14309(+)(>)
796620.VIBC2010_05780+
796620.VIBC2010_01208(PF05932)
796620.VIBC2010_19065PF03382
796620.VIBC2010_19085+
796620.VIBC2010_16069(<)
796620.VIBC2010_08023+
796620.VIBC2010_01448(>)
796620.VIBC2010_00799+
796620.VIBC2010_00550(+)(plastid)
796620.VIBC2010_03977+
796620.VIBC2010_17130+
796620.VIBC2010_04217+
796620.VIBC2010_15149(+)(>)
796620.VIBC2010_03324(+)ER; not used
796620.VIBC2010_17485+
796620.VIBC2010_02155(<)
796620.VIBC2010_03797(>)
796620.VIBC2010_14579(+)PF03382not used
796620.VIBC2010_09902+
796620.VIBC2010_05825PF03382not used
796620.VIBC2010_05820(+)PF03382not used
796620.VIBC2010_09342+
796620.VIBC2010_08163+
796620.VIBC2010_18214(>)
796620.VIBC2010_09742+
796620.VIBC2010_08568(+)(mitochondrial)
796620.VIBC2010_19410+
796620.VIBC2010_04449+
796620.VIBC2010_08563+
796620.VIBC2010_01543(>)
796620.VIBC2010_00015+
796620.VIBC2010_08233+
796620.VIBC2010_03947(+)(mitochondrial)
796620.VIBC2010_10661(>)
796620.VIBC2010_00764+
796620.VIBC2010_03309+
796620.VIBC2010_06204PF03382not used
796620.VIBC2010_06599(>)
796620.VIBC2010_01228(PF05932)
796620.VIBC2010_14434+
796620.VIBC2010_19420(+)(>)
796620.VIBC2010_16044(PF03059)
796620.VIBC2010_01793+
796620.VIBC2010_13879(<)
796620.VIBC2010_00575(>)
796620.VIBC2010_03952+
796620.VIBC2010_15959+
796620.VIBC2010_14139(<)
796620.VIBC2010_13051(<)
796620.VIBC2010_07349+
796620.VIBC2010_12901+
796620.VIBC2010_14089+
796620.VIBC2010_05484(+)(ER)
796620.VIBC2010_02596+
796620.VIBC2010_06784+
796620.VIBC2010_09612+
796620.VIBC2010_15597+
796620.VIBC2010_15064(<)
796620.VIBC2010_19435+
796620.VIBC2010_19895+
796620.VIBC2010_13241+
796620.VIBC2010_13999+
796620.VIBC2010_18729+
796620.VIBC2010_04082+
796620.VIBC2010_04429+
796620.VIBC2010_08018+
796620.VIBC2010_17560(PF00707)not used
796620.VIBC2010_08728+
796620.VIBC2010_18034(>)
796620.VIBC2010_03185(>)not used
796620.VIBC2010_05589+
796620.VIBC2010_14639(+)PF03382
796620.VIBC2010_08882(>)
796620.VIBC2010_14189+
796620.VIBC2010_05724(+)(ER)
796620.VIBC2010_18644+
796620.VIBC2010_05099+
796620.VIBC2010_01378(+)(PF07720)
796620.VIBC2010_09427(PF00707)
796620.VIBC2010_20275+
796620.VIBC2010_17774(<)
796620.VIBC2010_20270+
796620.VIBC2010_14714+
796620.VIBC2010_07564+
796620.VIBC2010_07369+
796620.VIBC2010_01158+
796620.VIBC2010_06684(+)(>)
796620.VIBC2010_02063(+)(ER)
796620.VIBC2010_20370+
796620.VIBC2010_03190(+)PF03382not used
796620.VIBC2010_02800+
796620.VIBC2010_02648PF03382
796620.VIBC2010_15667(>)
796620.VIBC2010_01343(PF05932)
796620.VIBC2010_09412(<)
796620.VIBC2010_16169+
796620.VIBC2010_12114(>)
796620.VIBC2010_04719(>)
796620.VIBC2010_16909+
796620.VIBC2010_04152+
796620.VIBC2010_04394+
796620.VIBC2010_12846(>)
796620.VIBC2010_16349(<)not used
796620.VIBC2010_07929(+)PF03382not used
796620.VIBC2010_06629PF03382not used
796620.VIBC2010_06624+
796620.VIBC2010_11719(>)
796620.VIBC2010_03677+
796620.VIBC2010_01608(>)
796620.VIBC2010_11624+
796620.VIBC2010_08718+
796620.VIBC2010_08867(+)plastid
796620.VIBC2010_11021+
796620.VIBC2010_15019(>)
796620.VIBC2010_15707+
796620.VIBC2010_01288(>)
796620.VIBC2010_11381(>)
796620.VIBC2010_03372(>)
796620.VIBC2010_20000+
796620.VIBC2010_00889(PF05932)
796620.VIBC2010_00869+
796620.VIBC2010_03447+
796620.VIBC2010_06634PF03382not used
796620.VIBC2010_13709PF03382
796620.VIBC2010_13874(+)(mitochondrial)
796620.VIBC2010_02621(>)not used
796620.VIBC2010_08708+
796620.VIBC2010_14739+
796620.VIBC2010_08703+
796620.VIBC2010_09272+
796620.VIBC2010_15399+
796620.VIBC2010_18619+
796620.VIBC2010_15672(+)
796620.VIBC2010_09472(+)
796620.VIBC2010_08058(+)
796620.VIBC2010_12139(+)
796620.VIBC2010_10557(+)
796620.VIBC2010_04934(+)
796620.VIBC2010_09087(+)
796620.VIBC2010_06994(+)not used
796620.VIBC2010_14709(+)
796620.VIBC2010_02566(+)
796620.VIBC2010_15819(+)
796620.VIBC2010_03522(+)
796620.VIBC2010_12709(+)
796620.VIBC2010_11531(+)
796620.VIBC2010_19820(+)
796620.VIBC2010_17065(+)
796620.VIBC2010_03487+
796620.VIBC2010_06479(+)
796620.VIBC2010_11839(+)
796620.VIBC2010_10671(+)
796620.VIBC2010_09452(+)
796620.VIBC2010_08038(+)
796620.VIBC2010_01258(+)
796620.VIBC2010_01703(+)
796620.VIBC2010_19945(+)
796620.VIBC2010_04334(+)
796620.VIBC2010_13116(+)
796620.VIBC2010_04247(+)
796620.VIBC2010_07599(+)
796620.VIBC2010_10826(+)
796620.VIBC2010_11191(+)
796620.VIBC2010_06319(+)
796620.VIBC2010_10222(+)
796620.VIBC2010_19235(+)
796620.VIBC2010_09192(+)
796620.VIBC2010_14909(+)
796620.VIBC2010_01084(+)
796620.VIBC2010_12369(+)
796620.VIBC2010_12169(+)
796620.VIBC2010_06974(+)
796620.VIBC2010_17719(+)
796620.VIBC2010_01069(+)
796620.VIBC2010_11411(+)
796620.VIBC2010_03937(+)
796620.VIBC2010_16879(+)
796620.VIBC2010_17045(+)
796620.VIBC2010_00824(+)
796620.VIBC2010_10102(+)
796620.VIBC2010_11674(+)
796620.VIBC2010_20325(+)
796620.VIBC2010_09232(+)
796620.VIBC2010_12284(+)
796620.VIBC2010_08548(+)
796620.VIBC2010_01273(+)
796620.VIBC2010_19450(+)
796620.VIBC2010_08303(+)
796620.VIBC2010_04007(+)
796620.VIBC2010_00909(+)
796620.VIBC2010_07689(+)
796620.VIBC2010_07939(+)
796620.VIBC2010_03582(+)
796620.VIBC2010_02965(+)
796620.VIBC2010_05504(+)
796620.VIBC2010_14699(+)
796620.VIBC2010_14744(+)
796620.VIBC2010_13341(+)
796620.VIBC2010_12239(+)
796620.VIBC2010_04017(+)
796620.VIBC2010_04279(+)not used
796620.VIBC2010_09347(+)
796620.VIBC2010_02885(+)
796620.VIBC2010_09032(+)
796620.VIBC2010_09652(+)
796620.VIBC2010_09967(+)
796620.VIBC2010_18099(+)
796620.VIBC2010_14114(+)
796620.VIBC2010_18839(+)
796620.VIBC2010_14754(+)
796620.VIBC2010_08693(+)
796620.VIBC2010_14974(+)
796620.VIBC2010_05029(+)
796620.VIBC2010_19180(+)
796620.VIBC2010_19290(+)
796620.VIBC2010_15429(+)
796620.VIBC2010_12756(+)
796620.VIBC2010_01858(+)
796620.VIBC2010_16859(+)
796620.VIBC2010_10686(+)
796620.VIBC2010_02895(+)
796620.VIBC2010_11401(+)
796620.VIBC2010_14569(+)
796620.VIBC2010_08173(+)
796620.VIBC2010_18224(+)
796620.VIBC2010_12329(+)
796620.VIBC2010_01443(+)
796620.VIBC2010_13321(+)
796620.VIBC2010_16204(+)
796620.VIBC2010_17510(+)
796620.VIBC2010_07414(+)
796620.VIBC2010_07529(+)
796620.VIBC2010_20330(+)
796620.VIBC2010_11989(+)
796620.VIBC2010_03867(+)
796620.VIBC2010_05009(+)
796620.VIBC2010_09587(+)
796620.VIBC2010_10886(+)
796620.VIBC2010_14959(+)
796620.VIBC2010_19275(+)
796620.VIBC2010_01788(+)
796620.VIBC2010_13864(+)
796620.VIBC2010_07539(+)
796620.VIBC2010_17944(+)
796620.VIBC2010_03090(+)
796620.VIBC2010_06374(+)
796620.VIBC2010_08758(+)
796620.VIBC2010_11116(+)
796620.VIBC2010_04207(+)
796620.VIBC2010_06804(+)
796620.VIBC2010_05109(+)
796620.VIBC2010_04664(+)
796620.VIBC2010_16224(+)
796620.VIBC2010_07509(+)
796620.VIBC2010_12876(+)
796620.VIBC2010_07294(+)
796620.VIBC2010_02135(+)
796620.VIBC2010_02915(+)
796620.VIBC2010_02261(+)
796620.VIBC2010_05805(+)
796620.VIBC2010_01363(+)
796620.VIBC2010_18890(+)
796620.VIBC2010_15114(+)
796620.VIBC2010_12464(+)not used
796620.VIBC2010_19635(+)
796620.VIBC2010_16819(+)
796620.VIBC2010_19925(+)
796620.VIBC2010_16569(+)
796620.VIBC2010_00215(+)
796620.VIBC2010_06779(+)
796620.VIBC2010_11759(+)
796620.VIBC2010_06489(+)
796620.VIBC2010_02271(+)
796620.VIBC2010_06399(+)
796620.VIBC2010_05905(+)
796620.VIBC2010_19220(+)
796620.VIBC2010_16494(+)
796620.VIBC2010_09422(+)
796620.VIBC2010_09137(+)
796620.VIBC2010_12584(+)
796620.VIBC2010_04944(+)
796620.VIBC2010_10187(+)
796620.VIBC2010_07704(+)
796620.VIBC2010_04894(+)
796620.VIBC2010_12926(+)
796620.VIBC2010_10567(+)
796620.VIBC2010_11346(+)
796620.VIBC2010_06979(+)
796620.VIBC2010_03427(+)
796620.VIBC2010_18419(+)
796620.VIBC2010_05865(+)
796620.VIBC2010_05079(+)
796620.VIBC2010_18529(+)
796620.VIBC2010_06834(+)
796620.VIBC2010_08927(+)
796620.VIBC2010_08073(+)
796620.VIBC2010_18669(+)
796620.VIBC2010_01903(+)
796620.VIBC2010_10986(+)
796620.VIBC2010_02760(+)not used
796620.VIBC2010_03857(+)
796620.VIBC2010_10751(+)
796620.VIBC2010_03075(+)
796620.VIBC2010_11979(+)
796620.VIBC2010_14159(+)not used
796620.VIBC2010_10047(+)
796620.VIBC2010_11406(+)
796620.VIBC2010_11151(+)
796620.VIBC2010_11629(+)not used
796620.VIBC2010_16609(+)
796620.VIBC2010_02251(+)
796620.VIBC2010_14299(+)
796620.VIBC2010_19545(+)
796620.VIBC2010_15874(+)
796620.VIBC2010_02125(+)
796620.VIBC2010_09917(+)
796620.VIBC2010_09402(+)
796620.VIBC2010_19975(+)
796620.VIBC2010_16594(+)
796620.VIBC2010_03842(+)
796620.VIBC2010_20170(+)
796620.VIBC2010_14529(+)
796620.VIBC2010_10547(+)
796620.VIBC2010_06144(+)
796620.VIBC2010_01318(+)
796620.VIBC2010_14284(+)
796620.VIBC2010_19740(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.6 (26/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================