Effective results for Thauera sp. MZ1T (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 55 proteins (0 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
85643.Tmz1t_1923				(PF08022) (PF01794)	ER
85643.Tmz1t_0489				(PF08022) (PF01794)	ER
85643.Tmz1t_1926				(PF01794)	ER
85643.Tmz1t_1972				(PF13549)	(ER); (mitochondrial)
85643.Tmz1t_1563				(PF01794)	ER
85643.Tmz1t_2846				(PF01094)	ER
85643.Tmz1t_2616				(PF09459)	ER
85643.Tmz1t_1267				(PF03092)	mitochondrial; (mitochondrial)
85643.Tmz1t_0413				(PF01814)	(mitochondrial)
85643.Tmz1t_1718				(PF13549)	(mitochondrial)
85643.Tmz1t_3530				(PF00163)	(mitochondrial)
85643.Tmz1t_3630				(PF09830)	(mitochondrial)
85643.Tmz1t_0075				(PF01794)	ER
85643.Tmz1t_4020				(PF09459)	(ER)
85643.Tmz1t_0858				(PF01814)
85643.Tmz1t_3765				(PF06258)
85643.Tmz1t_3084				(PF01814)
85643.Tmz1t_1351				(PF01814)
85643.Tmz1t_1953				(PF09361)
85643.Tmz1t_1891				(PF01814)
85643.Tmz1t_2304				(PF01695)
85643.Tmz1t_1809				(PF01814)
85643.Tmz1t_0316				(PF01695)
85643.Tmz1t_3313				(PF00163)
85643.Tmz1t_3952				(PF10013)	not used
85643.Tmz1t_1971				(PF13549)
85643.Tmz1t_0377				(PF01695)
85643.Tmz1t_2089				(PF01695)
85643.Tmz1t_2081				(PF01814)
85643.Tmz1t_1501				(PF13549)
85643.Tmz1t_2522				(PF09361)
85643.Tmz1t_0009				(PF01695)
85643.Tmz1t_1407				(PF01814)
85643.Tmz1t_3861				(PF09361)
85643.Tmz1t_3913				(PF01814)
85643.Tmz1t_1521				(PF01814)
85643.Tmz1t_3158				(PF01695)
85643.Tmz1t_0118				(PF01695)
85643.Tmz1t_1082				(PF01695)
85643.Tmz1t_1390				(PF16332)
85643.Tmz1t_2041				(PF13549)
85643.Tmz1t_0120				(PF01814)
85643.Tmz1t_1071				(PF01695)
85643.Tmz1t_1710				(PF08487)
85643.Tmz1t_0248				(PF01814)
85643.Tmz1t_0509				(PF01814)
85643.Tmz1t_2018				(PF09361)
85643.Tmz1t_2129				(PF08487)
85643.Tmz1t_0875				(PF09361)
85643.Tmz1t_0645				(PF13549)
85643.Tmz1t_0465				(PF01814)
85643.Tmz1t_1024				(PF09361)
85643.Tmz1t_2002				(PF09830)
85643.Tmz1t_3172				(PF01695)
85643.Tmz1t_3771				(PF06258)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================