Metamenu

Effective results for Corynebacterium variabile DSM 44702 (eggnog40)

Summary

Number of putative secreted proteins: 140
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 140 proteins (27 high, 113 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
858619.CVAR_1363(PF13276) (PF00665)mitochondrial
858619.CVAR_2976(PF13276) (PF01527) (PF00665)(mitochondrial)
858619.CVAR_1957(PF01497)ER
858619.CVAR_0752(PF01497)mitochondrial
858619.CVAR_0374(PF01497)ER
858619.CVAR_1079(PF17048)mitochondrial; ER
858619.CVAR_1360PF01610(ER); (mitochondrial)
858619.CVAR_0969PF01610(ER); (mitochondrial)
858619.CVAR_0983(PF05277)mitochondrial
858619.CVAR_2057(PF00665)(mitochondrial); plastid
858619.CVAR_1439(PF00665)(mitochondrial); plastid
858619.CVAR_1345(PF08310)ER
858619.CVAR_0231(PF01497)mitochondrial; (mitochondrial)
858619.CVAR_0235(PF01497)ER
858619.CVAR_0236(PF01497)mitochondrial
858619.CVAR_2812(PF01497)(ER)
858619.CVAR_2811(PF01497)mitochondrial; (mitochondrial)
858619.CVAR_2534(PF01497)mitochondrial
858619.CVAR_2539(PF01497)ER
858619.CVAR_1687(PF01497)mitochondrial
858619.CVAR_1387PF01610(mitochondrial)
858619.CVAR_0250(PF08310)ER
858619.CVAR_1930(PF08310)mitochondrial
858619.CVAR_2020(PF01195)(mitochondrial)
858619.CVAR_2730(PF01497)(mitochondrial); (plastid)
858619.CVAR_2605(PF01497)ER
858619.CVAR_2817(PF01497)(mitochondrial)
858619.CVAR_0072PF01610(ER); (mitochondrial)
858619.CVAR_2343(PF01497)ER; mitochondrial
858619.CVAR_2503(PF01497)mitochondrial
858619.CVAR_2502(PF01497)mitochondrial
858619.CVAR_3029PF01610(mitochondrial)
858619.CVAR_2974(PF13276) (PF01527) (PF00665)
858619.CVAR_2977(PF13276) (PF00665)(mitochondrial)
858619.CVAR_2230(PF01497)ER; (ER)
858619.CVAR_2435(PF01497)ER
858619.CVAR_1443(PF00665)(mitochondrial); plastid
858619.CVAR_0771(PF01497)ER
858619.CVAR_2441(PF00665)mitochondrial
858619.CVAR_0760(PF01497)ER
858619.CVAR_2820(PF01497)mitochondrial
858619.CVAR_2809(PF01497)(mitochondrial)
858619.CVAR_1901(PF13276) (PF00665)
858619.CVAR_1908(PF00872)(mitochondrial)
858619.CVAR_3071(PF13276) (PF00665)
858619.CVAR_0085(PF13276) (PF00665)
858619.CVAR_0246(PF08310)(mitochondrial)
858619.CVAR_0411(PF00872)plastid
858619.CVAR_3014(PF01497)(ER)
858619.CVAR_2831(PF13276) (PF00665)
858619.CVAR_2516(PF08354)(plastid)
858619.CVAR_2966(PF13276) (PF00665)
858619.CVAR_1689(PF05154)(mitochondrial)
858619.CVAR_1680PF01610(ER)
858619.CVAR_2796(PF00872)(mitochondrial)
858619.CVAR_0777(PF13276) (PF00665)
858619.CVAR_2469(PF00872)
858619.CVAR_2665(PF01687)
858619.CVAR_1362(PF01527)
858619.CVAR_0975PF01610
858619.CVAR_1368PF01610
858619.CVAR_0362PF00910
858619.CVAR_0980(PF01527)
858619.CVAR_2879PF01610
858619.CVAR_1388(PF09330)
858619.CVAR_1376PF01610
858619.CVAR_1372PF01610
858619.CVAR_1370(PF00665)
858619.CVAR_1379(PF01527)
858619.CVAR_1349(PF00665)
858619.CVAR_1905(PF00665)
858619.CVAR_1907(PF01527)
858619.CVAR_1902(PF01527)
858619.CVAR_1909(PF00872)
858619.CVAR_1635(PF01687)
858619.CVAR_0230(PF01497)
858619.CVAR_1287PF01610
858619.CVAR_1359(PF00872)
858619.CVAR_1355PF01610
858619.CVAR_1354(PF00872)
858619.CVAR_1351PF01610
858619.CVAR_1910PF01610not used
858619.CVAR_0082(PF01527)
858619.CVAR_0083(PF08310)
858619.CVAR_0081(PF00665)
858619.CVAR_2620(PF00872)
858619.CVAR_2621(PF00872)
858619.CVAR_1386(PF01527)
858619.CVAR_1383(PF09330)
858619.CVAR_1381(PF00665)
858619.CVAR_0251(PF08310)
858619.CVAR_2832(PF01527)
858619.CVAR_2019(PF01195)
858619.CVAR_2702(PF00872)
858619.CVAR_2700PF01610
858619.CVAR_2706PF01610
858619.CVAR_1399(PF00665)
858619.CVAR_2819(PF01497)
858619.CVAR_2816(PF01497)
858619.CVAR_1897(PF00665)
858619.CVAR_1899(PF09330)
858619.CVAR_0078(PF01527)
858619.CVAR_0071(PF00665)
858619.CVAR_0070(PF01527)
858619.CVAR_0618(PF00872)
858619.CVAR_3031(PF00872)
858619.CVAR_3035(PF00872)
858619.CVAR_1391PF01610
858619.CVAR_1393(PF00665)
858619.CVAR_2970(PF00872)
858619.CVAR_2971(PF00872)
858619.CVAR_2975(PF01527)
858619.CVAR_0051(PF01497)
858619.CVAR_2967(PF01527)
858619.CVAR_2968PF01610
858619.CVAR_1688(PF05154)
858619.CVAR_2083(PF05154)
858619.CVAR_2791(PF00665)
858619.CVAR_2797(PF00872)
858619.CVAR_2424PF01610
858619.CVAR_0034(PF01497)
858619.CVAR_0923(PF01497)
858619.CVAR_0813(PF00665)
858619.CVAR_0818PF01610
858619.CVAR_2541(PF01497)
858619.CVAR_2782(PF00872)
858619.CVAR_2780PF01610
858619.CVAR_2787PF01610not used
858619.CVAR_2789(PF01527)
858619.CVAR_2788(PF00872)
858619.CVAR_1023(PF11927)
858619.CVAR_1442(PF00665)
858619.CVAR_0313PF01610
858619.CVAR_0792(PF05495)
858619.CVAR_0776(PF01527)
858619.CVAR_0778(PF00872)
858619.CVAR_2849(PF00872)
858619.CVAR_2442PF01610
858619.CVAR_1019(PF11927)
858619.CVAR_0946PF01610

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================