Metamenu

Effective results for Helicobacter pylori 26695 (eggnog40)

Summary

Number of putative secreted proteins: 112
- Predicted by T4SEpre: 112
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 29 proteins (0 high, 29 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
85962.HP0275+(PF01535)ER
85962.HP1353+ER
85962.HP0082+ER
85962.HP0236+ER
85962.HP0542+ER
85962.HP1524+ER
85962.HP0323+ER
85962.HP1083+(ER)
85962.HP1080+ER
85962.HP1313+(mitochondrial)
85962.HP0130+ER
85962.HP0041+ER
85962.HP0129+ER
85962.HP0863+ER
85962.HP1438+ER; (mitochondrial)
85962.HP1454+ER
85962.HP1457+ER
85962.HP0099+ER
85962.HP1274+ER
85962.HP0605+ER
85962.HP0037+ER; (ER)
85962.HP1033+(mitochondrial); plastid
85962.HP0721+ER
85962.HP0508+ER
85962.HP0973+(ER)
85962.HP1340+ER
85962.HP0593(PF01555)(mitochondrial)
85962.HP0426(PF07510) (PF03235)
85962.HP1409(PF07510) (PF03235)
85962.HP0121+(mitochondrial)
85962.HP0643+(mitochondrial)
85962.HP0629(PF07510) (PF03235)
85962.HP0717+(mitochondrial)
85962.HP1369m+(PF01555)
85962.HP0513(PF07510) (PF03235)
85962.HP0348+(mitochondrial)
85962.HP0186+(PF07510)
85962.HP1352(PF01555)
85962.HP0260(PF01555)
85962.HP0888+
85962.HP0884+
85962.HP0951+
85962.HP1362+
85962.HP1367(PF01555)
85962.HP1368(PF01555)
85962.HP0092(PF01555)
85962.HP0090+
85962.HP0098+
85962.HP0164+
85962.HP0301+
85962.HP0547+
85962.HP0897+
85962.HP1555+
85962.HP0159(PF01501)
85962.HP0338+
85962.HP0930+
85962.HP0937(PF07510)
85962.HP0938(PF03235)
85962.HP1578(PF01501)
85962.HP0089+
85962.HP1529+
85962.HP1416(PF01501)
85962.HP0453+
85962.HP0176+
85962.HP0170+
85962.HP0852+
85962.HP0139+
85962.HP0688+
85962.HP0661+
85962.HP0050(PF01555)
85962.HP0273+
85962.HP0554+
85962.HP0900+
85962.HP0066+
85962.HP0247+
85962.HP0481+
85962.HP1078+
85962.HP0651(PF00852)
85962.HP1388+
85962.HP1472+
85962.HP1499+
85962.HP0017+
85962.HP1011+
85962.HP0263(PF01555)
85962.HP1397(PF03235)
85962.HP1396(PF07510)
85962.HP1265+
85962.HP1268+
85962.HP1003+
85962.HP1006+
85962.HP0285+
85962.HP0731+
85962.HP1133+
85962.HP0516+
85962.HP0232+
85962.HP0031+
85962.HP1105(PF01501)
85962.HP0345+
85962.HP1514+
85962.HP1021+
85962.HP1115+
85962.HP1114+
85962.HP0379(PF00852)
85962.HP0994+
85962.HP0971+
85962.HP1236+
85962.HP1587(PF03981)
85962.HP1588(PF03981)
85962.HP1589(PF03981)
85962.HP0181+
85962.HP0187(PF03235)
85962.HP0367+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================