Effective results for Peptoniphilus duerdenii ATCC BAA-1640 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
862517.HMPREF9225_0768				(PF08840)	ER
862517.HMPREF9225_1318				(PF08840)	ER
862517.HMPREF9225_1953				(PF01992)	(mitochondrial)
862517.HMPREF9225_1191				PF10912	ER
862517.HMPREF9225_0694				(PF11070)	ER
862517.HMPREF9225_0607				(PF02361)	(ER); ER
862517.HMPREF9225_0248				(PF02361)	ER
862517.HMPREF9225_1949				(PF01813)	mitochondrial
862517.HMPREF9225_1831				(PF01813)	mitochondrial; (mitochondrial)
862517.HMPREF9225_1353				(PF02361)	ER
862517.HMPREF9225_1835				(PF01990)	(mitochondrial)
862517.HMPREF9225_1837				(PF01496)
862517.HMPREF9225_0885				(PF16199)
862517.HMPREF9225_1833				(PF16886)
862517.HMPREF9225_0955				(PF16199)
862517.HMPREF9225_1956				(PF01496)
862517.HMPREF9225_1954				(PF01991)
862517.HMPREF9225_1952				(PF01990)
862517.HMPREF9225_1951				(PF16886)
862517.HMPREF9225_1546				(PF02361)
862517.HMPREF9225_0303				(PF12646)
862517.HMPREF9225_1085				(PF14512)
862517.HMPREF9225_0864				(PF00882)
862517.HMPREF9225_1451				(PF16199)
862517.HMPREF9225_1290				(PF02361)
862517.HMPREF9225_0640				(PF13735)
862517.HMPREF9225_1863				(PF13735)
862517.HMPREF9225_1463				(PF00882)
862517.HMPREF9225_1700				(PF14512)
862517.HMPREF9225_0532				(PF02361)
862517.HMPREF9225_1838				(PF01992)
862517.HMPREF9225_0515				(PF02361)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================