Effective results for Peptoniphilus duerdenii ATCC BAA-1640 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
862517.HMPREF9225_0768(PF08840)ER
862517.HMPREF9225_1318(PF08840)ER
862517.HMPREF9225_1953(PF01992)(mitochondrial)
862517.HMPREF9225_1191PF10912ER
862517.HMPREF9225_0694(PF11070)ER
862517.HMPREF9225_0607(PF02361)(ER); ER
862517.HMPREF9225_0248(PF02361)ER
862517.HMPREF9225_1949(PF01813)mitochondrial
862517.HMPREF9225_1831(PF01813)mitochondrial; (mitochondrial)
862517.HMPREF9225_1353(PF02361)ER
862517.HMPREF9225_1835(PF01990)(mitochondrial)
862517.HMPREF9225_1837(PF01496)
862517.HMPREF9225_0885(PF16199)
862517.HMPREF9225_1833(PF16886)
862517.HMPREF9225_0955(PF16199)
862517.HMPREF9225_1956(PF01496)
862517.HMPREF9225_1954(PF01991)
862517.HMPREF9225_1952(PF01990)
862517.HMPREF9225_1951(PF16886)
862517.HMPREF9225_1546(PF02361)
862517.HMPREF9225_0303(PF12646)
862517.HMPREF9225_1085(PF14512)
862517.HMPREF9225_0864(PF00882)
862517.HMPREF9225_1451(PF16199)
862517.HMPREF9225_1290(PF02361)
862517.HMPREF9225_0640(PF13735)
862517.HMPREF9225_1863(PF13735)
862517.HMPREF9225_1463(PF00882)
862517.HMPREF9225_1700(PF14512)
862517.HMPREF9225_0532(PF02361)
862517.HMPREF9225_1838(PF01992)
862517.HMPREF9225_0515(PF02361)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================