Metamenu

Effective results for Treponema succinifaciens DSM 2489 (eggnog40)

Summary

Number of putative secreted proteins: 83
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 83 proteins (14 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
869209.Tresu_1520(PF16561)ER
869209.Tresu_0507(PF01442)ER
869209.Tresu_1662(PF12895)ER
869209.Tresu_1193(PF04851)(mitochondrial)
869209.Tresu_0546(PF13173)mitochondrial; (mitochondrial)
869209.Tresu_2001(PF13173)(mitochondrial)
869209.Tresu_0413(PF16561)ER
869209.Tresu_0873(PF13173)ER
869209.Tresu_2527(PF12895)ER
869209.Tresu_1447(PF16314)(mitochondrial)
869209.Tresu_1557PF03727 PF00349
869209.Tresu_1551(PF01715)(plastid)
869209.Tresu_0779(PF05154)(mitochondrial)
869209.Tresu_2328(PF13173)(mitochondrial)
869209.Tresu_1648(PF04851)
869209.Tresu_0110(PF00145)
869209.Tresu_1640(PF04851)
869209.Tresu_1675(PF13173)
869209.Tresu_1987(PF00145)
869209.Tresu_1215(PF14622)
869209.Tresu_1186PF12762
869209.Tresu_0106(PF02371)
869209.Tresu_0583(PF04851)
869209.Tresu_2182PF13151
869209.Tresu_2169(PF13173)
869209.Tresu_0820(PF02943)
869209.Tresu_1682(PF00145)
869209.Tresu_0554(PF13173)
869209.Tresu_0315(PF13173)
869209.Tresu_2377(PF16561)
869209.Tresu_0789(PF02371)
869209.Tresu_0800(PF02371)
869209.Tresu_1311(PF04851)
869209.Tresu_0151(PF14622)
869209.Tresu_0158PF13151
869209.Tresu_0575(PF13173)
869209.Tresu_0570(PF04851)
869209.Tresu_0371PF12762
869209.Tresu_0201(PF04851)
869209.Tresu_2046PF12762
869209.Tresu_1767(PF00145)
869209.Tresu_0216(PF13173)
869209.Tresu_1025PF12762
869209.Tresu_0778(PF02371)
869209.Tresu_0695(PF00145)
869209.Tresu_0693(PF02371)
869209.Tresu_2324(PF02371)
869209.Tresu_1170(PF12895)
869209.Tresu_1355PF12762
869209.Tresu_0530(PF00145)
869209.Tresu_2002(PF13173)
869209.Tresu_0705(PF02371)
869209.Tresu_0876(PF13173)
869209.Tresu_1618(PF01813)
869209.Tresu_0740(PF02371)
869209.Tresu_0741(PF05154)
869209.Tresu_1435(PF01813)
869209.Tresu_1436(PF16886)
869209.Tresu_2278PF04733
869209.Tresu_1115(PF04851)
869209.Tresu_0519(PF04851)
869209.Tresu_1604(PF02371)
869209.Tresu_0889(PF02371)
869209.Tresu_0647(PF02371)
869209.Tresu_0646(PF04851)
869209.Tresu_0262PF12762
869209.Tresu_1632PF13151not used
869209.Tresu_0540(PF00145)
869209.Tresu_2031(PF04851)
869209.Tresu_1620(PF16886)
869209.Tresu_0713(PF00145)
869209.Tresu_0711PF12762
869209.Tresu_0715(PF02371)
869209.Tresu_0662(PF05154)
869209.Tresu_0281PF12762
869209.Tresu_2535(PF04851)
869209.Tresu_1090(PF04851)
869209.Tresu_1654PF13151
869209.Tresu_0872(PF13173)
869209.Tresu_1659(PF01715)
869209.Tresu_0703(PF00145)
869209.Tresu_0673(PF02371)
869209.Tresu_0679(PF05154)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================