Effective results for Streptococcus infantis SK1302 (eggnog40)

Summary

Number of putative secreted proteins: 93
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 22 proteins (4 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
871237.SIN_1720			+		ER
871237.SIN_1992			+		ER
871237.SIN_0971				PF04103	ER
871237.SIN_0213			+		ER
871237.SIN_1296			+		ER
871237.SIN_0939			+		ER
871237.SIN_0441			+		(mitochondrial); (plastid)
871237.SIN_0274			+		mitochondrial
871237.SIN_1258			+		ER
871237.SIN_1654			+		mitochondrial
871237.SIN_0867				(PF00344)	ER; (ER)
871237.SIN_0780			+		ER
871237.SIN_1785			+		(mitochondrial); mitochondrial
871237.SIN_0882			+		ER
871237.SIN_1688			+		ER
871237.SIN_1114				PF02916	ER
871237.SIN_2011			+		ER
871237.SIN_1692			+		ER
871237.SIN_0420				(PF03644)	(mitochondrial)
871237.SIN_0186			+		ER
871237.SIN_0751			+		ER
871237.SIN_0190			+		(mitochondrial)
871237.SIN_0376				(PF00344)	mitochondrial
871237.SIN_2056			+		ER
871237.SIN_0765			+		mitochondrial; (mitochondrial)
871237.SIN_1965			+		(mitochondrial); (plastid)
871237.SIN_1148			+		ER
871237.SIN_0041			+		(ER)
871237.SIN_0743			+		(plastid)
871237.SIN_0105			+		(mitochondrial)
871237.SIN_0841				(PF13246)
871237.SIN_0399			+
871237.SIN_1054			+
871237.SIN_0112			+
871237.SIN_0824			+
871237.SIN_0489			+
871237.SIN_1444				(PF04991)
871237.SIN_1443				(PF04991)
871237.SIN_1440				(PF04991)
871237.SIN_1995			+
871237.SIN_0602			+
871237.SIN_0604			+
871237.SIN_0727			+
871237.SIN_1982				(PF01633)
871237.SIN_1983				(PF01633)
871237.SIN_1676			+
871237.SIN_1678				(PF03848)
871237.SIN_1679				(PF03848)
871237.SIN_1079			+
871237.SIN_0930			+
871237.SIN_0443			+
871237.SIN_0847			+
871237.SIN_0570			+
871237.SIN_0479			+
871237.SIN_0054			+
871237.SIN_1894			+
871237.SIN_1096			+
871237.SIN_1255			+
871237.SIN_0178				PF00572	not used
871237.SIN_0913			+
871237.SIN_0910			+
871237.SIN_0865			+
871237.SIN_1376			+
871237.SIN_1132			+
871237.SIN_1130				(PF05704)
871237.SIN_0899				(PF08975)
871237.SIN_0256				(PF13246)
871237.SIN_0087			+
871237.SIN_2013			+
871237.SIN_0508			+
871237.SIN_1749			+
871237.SIN_2003			+
871237.SIN_0354			+
871237.SIN_0357			+
871237.SIN_2073			+
871237.SIN_0185			+
871237.SIN_1766			+
871237.SIN_0166			+
871237.SIN_0163			+
871237.SIN_0381			+
871237.SIN_0541			+
871237.SIN_2063			+
871237.SIN_1576			+
871237.SIN_0375			+
871237.SIN_0177				PF00572
871237.SIN_1629				(PF01765)
871237.SIN_0962			+
871237.SIN_0251			+
871237.SIN_1462			+
871237.SIN_1967			+
871237.SIN_1142				(PF07555)
871237.SIN_1141				(PF07555)
871237.SIN_1630				(PF01765)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================