Effective results for Acinetobacter calcoaceticus PHEA-2 (eggnog40)

Summary

Number of putative secreted proteins: 15
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 15 proteins (1 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
871585.BDGL_001529(PF13582)ER
871585.BDGL_002883(PF14497)mitochondrial
871585.BDGL_000699(PF14497)(mitochondrial)
871585.BDGL_001572(PF14497)(plastid)
871585.BDGL_000199(PF07819)(plastid)
871585.BDGL_003315(PF14497)
871585.BDGL_001948(PF03971)
871585.BDGL_000872(PF14497)
871585.BDGL_000628PF15636
871585.BDGL_002675(PF07819)
871585.BDGL_001950(PF03971)
871585.BDGL_001949(PF03971)
871585.BDGL_001734(PF11815)
871585.BDGL_003061(PF14497)
871585.BDGL_002829(PF07819)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.75 (6/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================