Effective results for gamma proteobacterium IMCC3088 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 26 proteins (2 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
876044.IMCC3088_260(PF13469)ER
876044.IMCC3088_466(PF14336)(ER)
876044.IMCC3088_1066(PF05019)(mitochondrial)
876044.IMCC3088_1824(PF14863)ER
876044.IMCC3088_2738(PF02544)ER
876044.IMCC3088_1963(PF01509)(mitochondrial)
876044.IMCC3088_890(PF14863)ER; (ER)
876044.IMCC3088_1913(PF13469)(mitochondrial)
876044.IMCC3088_2104(PF13469)(plastid)
876044.IMCC3088_2105(PF06258)(mitochondrial)
876044.IMCC3088_1512PF00410(ER)
876044.IMCC3088_462(PF11815)
876044.IMCC3088_1859(PF16565)
876044.IMCC3088_2102(PF06258)
876044.IMCC3088_87(PF13469)
876044.IMCC3088_944PF00410not used
876044.IMCC3088_790(PF02958)
876044.IMCC3088_1496(PF02958)
876044.IMCC3088_1495(PF13469)
876044.IMCC3088_1019(PF13469)
876044.IMCC3088_132(PF13469)
876044.IMCC3088_61(PF14863)
876044.IMCC3088_1962(PF01509)
876044.IMCC3088_1467(PF13469)
876044.IMCC3088_2215(PF13469)
876044.IMCC3088_242(PF05019)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================