Effective results for Selenomonas sp. oral taxon 137 str. F0430 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 47 proteins (3 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
879310.HMPREF9162_1731				(PF00872)	mitochondrial; (mitochondrial)
879310.HMPREF9162_1623				(PF13541) (PF01078)
879310.HMPREF9162_0202				PF00349 PF03727
879310.HMPREF9162_0030				(PF13541) (PF01078)
879310.HMPREF9162_1677				(PF13541) (PF01078)
879310.HMPREF9162_2333				PF00349 PF03727
879310.HMPREF9162_1737				(PF00872)	(mitochondrial)
879310.HMPREF9162_0079				(PF13541) (PF01078)
879310.HMPREF9162_0591				(PF02527)	not used
879310.HMPREF9162_0590				(PF02527)
879310.HMPREF9162_1752				(PF00872)
879310.HMPREF9162_2192				(PF00872)
879310.HMPREF9162_2178				(PF00872)
879310.HMPREF9162_1395				(PF00872)
879310.HMPREF9162_1396				(PF00872)
879310.HMPREF9162_0567				(PF00872)
879310.HMPREF9162_0568				(PF00872)
879310.HMPREF9162_1764				(PF12646)
879310.HMPREF9162_1617				(PF13844)
879310.HMPREF9162_1618				(PF13844)
879310.HMPREF9162_2236				(PF00872)
879310.HMPREF9162_0577				(PF00872)
879310.HMPREF9162_0576				(PF00872)
879310.HMPREF9162_0574				(PF00872)	not used
879310.HMPREF9162_0573				(PF00872)
879310.HMPREF9162_1751				(PF00872)
879310.HMPREF9162_0377				PF11443
879310.HMPREF9162_0207				(PF00872)
879310.HMPREF9162_0201				(PF00872)
879310.HMPREF9162_0208				(PF00872)	not used
879310.HMPREF9162_2307				(PF00872)
879310.HMPREF9162_2308				(PF00872)
879310.HMPREF9162_1800				(PF05167)
879310.HMPREF9162_1801				(PF05167)
879310.HMPREF9162_1665				(PF00476)
879310.HMPREF9162_0249				(PF13844)
879310.HMPREF9162_0248				(PF13844)
879310.HMPREF9162_0247				(PF13844)
879310.HMPREF9162_0246				(PF13844)
879310.HMPREF9162_2249				(PF13844)
879310.HMPREF9162_1059				(PF01078)
879310.HMPREF9162_1736				(PF00872)
879310.HMPREF9162_1732				(PF00872)
879310.HMPREF9162_1733				(PF00872)
879310.HMPREF9162_0072				(PF00476)
879310.HMPREF9162_0856				(PF00476)
879310.HMPREF9162_1725				(PF00476)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================