Effective results for Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980 (eggnog40)

Summary

Number of putative secreted proteins: 641
- Predicted by EffectiveT3: 176 (high confidence), 270 (low confidence)
- Predicted by EffectiveCCBD: 28 within, 28 before, 44 behind expected region 25..70aa
- Predicted by T4SEpre: 100
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 61 proteins (4 high, 57 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
882884.SARI_03979		+			(ER)
882884.SARI_01475		(>)		(PF10142)	ER
882884.SARI_00695		(>)		(PF03313) (PF03315)	(mitochondrial)
882884.SARI_04519			+	(PF01527)	(mitochondrial)
882884.SARI_01500			+		ER
882884.SARI_04653		(<)			(ER)
882884.SARI_03921		+			ER
882884.SARI_03212		(<)			ER
882884.SARI_04379				(PF03313) (PF03315)	(plastid)
882884.SARI_02188			+		ER
882884.SARI_03079			+	(PF01527)	(mitochondrial)
882884.SARI_01174		+			(ER)
882884.SARI_04275		(>)			ER
882884.SARI_02468		(>)			ER
882884.SARI_03595				(PF13384)	(mitochondrial); (plastid)
882884.SARI_01741			+		ER
882884.SARI_04621				(PF01527)	(mitochondrial)
882884.SARI_00905			+		(mitochondrial); mitochondrial
882884.SARI_00831				(PF10662)	mitochondrial
882884.SARI_02502			+		(mitochondrial)
882884.SARI_02653			+		mitochondrial
882884.SARI_04314			+		ER
882884.SARI_04631				(PF03222)	(ER)
882884.SARI_03042		(>)			ER
882884.SARI_03267			+		ER
882884.SARI_02313		(>)			mitochondrial; (mitochondrial)
882884.SARI_02626	+				(mitochondrial); plastid
882884.SARI_00673			+		(ER); ER
882884.SARI_03095				(PF13384)	(mitochondrial); (plastid)
882884.SARI_02235		(>)			ER
882884.SARI_04078		(>)			ER
882884.SARI_04116		(>)			ER
882884.SARI_04087	+				(mitochondrial)
882884.SARI_04479		(<)			(ER)
882884.SARI_03816			+		ER
882884.SARI_01412		(>)			(mitochondrial)
882884.SARI_01799			+		ER
882884.SARI_01244		+			(ER)
882884.SARI_00445		+			ER; mitochondrial
882884.SARI_03060				(PF13384)	(mitochondrial); (plastid)
882884.SARI_02550		(>)			ER
882884.SARI_02321		+			ER
882884.SARI_01120		+			ER
882884.SARI_01002				(PF03222)	(mitochondrial)
882884.SARI_01869			+		ER
882884.SARI_04692				(PF03313) (PF03315)	(plastid)
882884.SARI_04166			+		(mitochondrial); mitochondrial
882884.SARI_03683			+		ER
882884.SARI_04436				PF05935	(mitochondrial)
882884.SARI_02777		(>)			ER
882884.SARI_03818		(<)			ER
882884.SARI_02754	+				mitochondrial
882884.SARI_04532				(PF01276) (PF03711)	(mitochondrial)
882884.SARI_03292		+			mitochondrial; (mitochondrial)
882884.SARI_01665			+		ER; (ER)
882884.SARI_04010	+				ER; (ER)
882884.SARI_01066	+		+		(plastid)
882884.SARI_00222			+		ER
882884.SARI_02390	(+)		+		ER
882884.SARI_00415				(PF10662)	(mitochondrial)
882884.SARI_03144		+			ER
882884.SARI_02637		+			(mitochondrial)
882884.SARI_01604			+		ER
882884.SARI_01429		(>)			ER
882884.SARI_00173			+		(mitochondrial)
882884.SARI_02551	+				ER
882884.SARI_02953				PF05935	(mitochondrial); mitochondrial
882884.SARI_02912		(<)			ER
882884.SARI_03973			+		ER
882884.SARI_01097		(>)			ER
882884.SARI_01091			+		mitochondrial
882884.SARI_01410				(PF06884)	ER
882884.SARI_03420		(>)			ER
882884.SARI_00386			+		(mitochondrial)
882884.SARI_03126		(<)			ER
882884.SARI_03622		(>)			(mitochondrial)
882884.SARI_04332			+		ER
882884.SARI_01392			+		(mitochondrial)
882884.SARI_03950	+				(ER)
882884.SARI_03221	(+)				ER
882884.SARI_03225		(<)			(ER)
882884.SARI_00968	+				(plastid)
882884.SARI_00364	+				(mitochondrial)
882884.SARI_00106	+	(<)
882884.SARI_00630	+	+
882884.SARI_04376	+			(PF03222)
882884.SARI_01113				(PF03313) (PF03315)
882884.SARI_00089	+		+
882884.SARI_04031	(+)				(mitochondrial)
882884.SARI_02240				(PF01276) (PF03711)
882884.SARI_00834	+	(>)
882884.SARI_04484				(PF03738)	(ER)
882884.SARI_00659	(+)				(ER)
882884.SARI_00652	+				plastid
882884.SARI_03178	+				(ER)
882884.SARI_03268	+		+
882884.SARI_02227		(>)			(mitochondrial)
882884.SARI_00253	+	+
882884.SARI_00076	+				(plastid)
882884.SARI_04151	+	(>)
882884.SARI_02230			+		(mitochondrial)
882884.SARI_01021	(+)				(mitochondrial)
882884.SARI_02982	(+)				(mitochondrial); mitochondrial
882884.SARI_00317				(PF01276) (PF03711)
882884.SARI_04211			+		(mitochondrial)
882884.SARI_03335	+		+
882884.SARI_02201				(PF05034) (PF07476)
882884.SARI_00163	+	(>)
882884.SARI_03945	(+)	(>)			(plastid)
882884.SARI_04442	(+)				mitochondrial; (mitochondrial)
882884.SARI_01485	+				(mitochondrial); not used
882884.SARI_01480	+			(PF03538)
882884.SARI_01313	(+)		+		(mitochondrial)
882884.SARI_01461	+				(plastid)
882884.SARI_01469	(+)				(ER)
882884.SARI_01915	(+)				(mitochondrial)
882884.SARI_03833	+				(mitochondrial)
882884.SARI_04508	(+)				(mitochondrial)
882884.SARI_04509	(+)				ER; (ER)
882884.SARI_00734	(+)				ER
882884.SARI_04345	+			(PF03222)
882884.SARI_01581			+		(plastid)
882884.SARI_02768				(PF01276) (PF03711)
882884.SARI_03361				(PF01276) (PF03711)
882884.SARI_02019	+				(mitochondrial); not used
882884.SARI_02579				(PF01527)	(mitochondrial)
882884.SARI_01657	(+)				mitochondrial; (mitochondrial)
882884.SARI_00096	(+)				ER
882884.SARI_04084			+		(plastid)
882884.SARI_02566	(+)				(mitochondrial); (plastid)
882884.SARI_03145	(+)				ER
882884.SARI_02035				(PF01527)	(mitochondrial)
882884.SARI_03112	+				(mitochondrial)
882884.SARI_01737	(+)				ER; (ER)
882884.SARI_01552	+				(mitochondrial)
882884.SARI_03177	+				(mitochondrial); not used
882884.SARI_00556		(<)			(mitochondrial); not used
882884.SARI_03603		(<)			(mitochondrial)
882884.SARI_03151	(+)		+		(mitochondrial)
882884.SARI_03627	(+)				ER
882884.SARI_03946	(+)				(mitochondrial); (plastid)
882884.SARI_00979	+				plastid
882884.SARI_03414	+		+
882884.SARI_01084	+				(mitochondrial)
882884.SARI_00976	+	+
882884.SARI_03956	+			PF05935
882884.SARI_00627	+				plastid
882884.SARI_02668				(PF13384)
882884.SARI_02065	+
882884.SARI_02932	+				not used
882884.SARI_02981	+
882884.SARI_02664			+
882884.SARI_02662	(+)				(mitochondrial)
882884.SARI_00963	+
882884.SARI_01163	+
882884.SARI_01167			+
882884.SARI_00295		(>)
882884.SARI_03602	+
882884.SARI_01210	+
882884.SARI_00589	+
882884.SARI_00032	+
882884.SARI_03032			+
882884.SARI_03728	+
882884.SARI_00634			+
882884.SARI_04337		(<)
882884.SARI_02450	+
882884.SARI_02852	+
882884.SARI_02853	(+)	(<)
882884.SARI_02678	+
882884.SARI_02679	(+)				(mitochondrial)
882884.SARI_02675				(PF04098)
882884.SARI_02959	(+)			PF05935
882884.SARI_00914	+				not used
882884.SARI_00911	+
882884.SARI_01191		(<)
882884.SARI_00353	+
882884.SARI_01511	(+)	(<)
882884.SARI_01994	(+)				(ER)
882884.SARI_03257	+
882884.SARI_04032	+
882884.SARI_00646				(PF00959)
882884.SARI_03022	+
882884.SARI_03846	+
882884.SARI_02517		(>)
882884.SARI_03840	+
882884.SARI_02860		(<)
882884.SARI_02640	+
882884.SARI_02647			+
882884.SARI_00225			+
882884.SARI_03876			+
882884.SARI_01521	+
882884.SARI_01524		+
882884.SARI_00837	(+)				(plastid)
882884.SARI_01236				(PF01527)
882884.SARI_04131			+
882884.SARI_04487	(+)				(mitochondrial)
882884.SARI_00656	(+)			(PF03538)
882884.SARI_00654				(PF12255)
882884.SARI_00655	+
882884.SARI_03629	(+)	(<)
882884.SARI_04007				(PF03222)
882884.SARI_02504	+
882884.SARI_02475	+
882884.SARI_03012	+
882884.SARI_02096	(+)				(mitochondrial)
882884.SARI_02654				(PF13455)
882884.SARI_02656				(PF00959)
882884.SARI_00651	(+)				plastid
882884.SARI_01751	+
882884.SARI_03554	+
882884.SARI_00363				(PF16485)
882884.SARI_00805		(>)
882884.SARI_00333		(>)
882884.SARI_04491	+
882884.SARI_00796	(+)	+
882884.SARI_00667	(+)				(mitochondrial)
882884.SARI_03461	+
882884.SARI_04303	+
882884.SARI_03046	(+)				(mitochondrial); not used
882884.SARI_02718	+
882884.SARI_02316	+
882884.SARI_03378	(+)				(plastid)
882884.SARI_02790	+
882884.SARI_02792	+
882884.SARI_02363	+
882884.SARI_01850		(>)
882884.SARI_02135	+
882884.SARI_00105	+
882884.SARI_00925	+
882884.SARI_00920			+
882884.SARI_00923		+
882884.SARI_03008		+
882884.SARI_03925				(PF06176)
882884.SARI_00810			+
882884.SARI_00819	+				not used
882884.SARI_01782			+
882884.SARI_02157	+
882884.SARI_00114	+
882884.SARI_00251			+
882884.SARI_01814	+
882884.SARI_01813	+
882884.SARI_01819	+
882884.SARI_01818	+
882884.SARI_04155		(<)			not used
882884.SARI_03785		(<)
882884.SARI_03252	(+)		+
882884.SARI_03258				(PF03738)	not used
882884.SARI_02415			+
882884.SARI_03647	+
882884.SARI_02418		(>)
882884.SARI_02786			+
882884.SARI_03326				(PF01527)
882884.SARI_03321	+
882884.SARI_02123		+
882884.SARI_02125	+
882884.SARI_01416	+
882884.SARI_01418	+
882884.SARI_01330	+
882884.SARI_00869		(>)
882884.SARI_00261		+
882884.SARI_00319	+
882884.SARI_03587			+
882884.SARI_01808			+
882884.SARI_03853	+
882884.SARI_00443		(>)
882884.SARI_00442			+
882884.SARI_04366			+
882884.SARI_03405		(>)
882884.SARI_03883	+
882884.SARI_03885	+
882884.SARI_03089	(+)				plastid
882884.SARI_02429	+
882884.SARI_03116		+
882884.SARI_03334			+
882884.SARI_02203	(+)			(PF14330)
882884.SARI_02685	+
882884.SARI_02684	+
882884.SARI_03435	+
882884.SARI_00874	+
882884.SARI_00347	+
882884.SARI_01018			+
882884.SARI_01479				(PF00959)	not used
882884.SARI_01273				(PF01527)
882884.SARI_01274	+
882884.SARI_00270				(PF14328)
882884.SARI_01900	+
882884.SARI_00696			+
882884.SARI_00055				(PF01527)
882884.SARI_04511	(+)				(plastid)
882884.SARI_03500	+				not used
882884.SARI_02212	+
882884.SARI_02691		(>)
882884.SARI_04441				(PF03738)
882884.SARI_04557	+
882884.SARI_04559	+
882884.SARI_01319		(>)
882884.SARI_01646	+
882884.SARI_01312	(+)		+
882884.SARI_00843	+
882884.SARI_00845	+
882884.SARI_00619			+
882884.SARI_00207	+
882884.SARI_02333	+
882884.SARI_00428		(>)
882884.SARI_04189	(+)		+
882884.SARI_02931			+
882884.SARI_03355		(<)
882884.SARI_02352			+
882884.SARI_02175	(+)				(ER); not used
882884.SARI_01917		+
882884.SARI_02007	+
882884.SARI_04637			+
882884.SARI_02757	+
882884.SARI_01821	+
882884.SARI_04609			+
882884.SARI_01827	(+)				(plastid)
882884.SARI_01825	+
882884.SARI_01674	+
882884.SARI_01583	(+)	+
882884.SARI_01919	+
882884.SARI_00413	+
882884.SARI_00064	+
882884.SARI_00067	+
882884.SARI_01299	+
882884.SARI_01857	+
882884.SARI_00211	(+)				(ER)
882884.SARI_01922	+
882884.SARI_03748		(<)
882884.SARI_03740		(>)
882884.SARI_04245	+
882884.SARI_02767		(>)
882884.SARI_02347	+
882884.SARI_02167	+
882884.SARI_02164	+
882884.SARI_04367		(<)			not used
882884.SARI_00091	+
882884.SARI_02801		+
882884.SARI_04465		(>)
882884.SARI_01844	+
882884.SARI_00534	+
882884.SARI_00886	+				not used
882884.SARI_00220		(>)
882884.SARI_00110	+
882884.SARI_01939	+
882884.SARI_00404	(+)				(plastid)
882884.SARI_00159	+
882884.SARI_03995	+
882884.SARI_00087				(PF07720)
882884.SARI_00715				(PF13384)
882884.SARI_04411	+
882884.SARI_04263			+
882884.SARI_03373	+
882884.SARI_03819		(>)
882884.SARI_02395	(+)		+
882884.SARI_02625	(+)			(PF00959)
882884.SARI_04286	+
882884.SARI_03423			+
882884.SARI_03318	(+)				(plastid)
882884.SARI_00891				(PF01527)	not used
882884.SARI_01306			+
882884.SARI_01947			+
882884.SARI_00090	+
882884.SARI_04026	+
882884.SARI_00707				(PF01527)
882884.SARI_04393				(PF01527)
882884.SARI_02960	+
882884.SARI_02961			+
882884.SARI_04693	+
882884.SARI_02494	+
882884.SARI_02493	+
882884.SARI_02383		(<)			not used
882884.SARI_02632	+
882884.SARI_02146				(PF01527)
882884.SARI_02635				(PF01527)
882884.SARI_03400	(+)		+
882884.SARI_02038	+
882884.SARI_03442		+
882884.SARI_03566	+
882884.SARI_01133		(<)
882884.SARI_01135			+
882884.SARI_00555	+
882884.SARI_02558	+
882884.SARI_02555		(<)
882884.SARI_02553		+
882884.SARI_03415			+
882884.SARI_04381				(PF03313)
882884.SARI_04386				(PF01527)
882884.SARI_00605	(+)	+
882884.SARI_03157		(>)
882884.SARI_02915	+
882884.SARI_02608	(+)	(>)
882884.SARI_02731	+
882884.SARI_02738	+
882884.SARI_02048	+
882884.SARI_04687	+
882884.SARI_01882	(+)	(<)
882884.SARI_01382	+
882884.SARI_04004	+
882884.SARI_01894	+
882884.SARI_01565		(>)
882884.SARI_03422		(>)
882884.SARI_03517		(<)
882884.SARI_01049			+
882884.SARI_00766			+
882884.SARI_02946	+
882884.SARI_03127	+
882884.SARI_02613	+				not used
882884.SARI_00051	+
882884.SARI_00959	+
882884.SARI_01692	+
882884.SARI_03974			+
882884.SARI_03504	(+)	(<)
882884.SARI_01628	+
882884.SARI_02370	+
882884.SARI_01710	+
882884.SARI_01714	+
882884.SARI_01716	(+)				plastid
882884.SARI_04328	+
882884.SARI_01086		+
882884.SARI_01390	+
882884.SARI_04394	+
882884.SARI_01151	+
882884.SARI_01573	+
882884.SARI_01576		(>)
882884.SARI_00287	+
882884.SARI_01978	(+)	+
882884.SARI_04450	(+)				(mitochondrial)
882884.SARI_03139	+
882884.SARI_03132	+
882884.SARI_02443			+
882884.SARI_04290	+
882884.SARI_02741	(+)
882884.SARI_02589	(+)
882884.SARI_00966	(+)
882884.SARI_01364	(+)
882884.SARI_00293	(+)				not used
882884.SARI_01984	(+)				not used
882884.SARI_03033	(+)
882884.SARI_03100	(+)
882884.SARI_03854	(+)
882884.SARI_03219	(+)
882884.SARI_02299	(+)
882884.SARI_02279	(+)
882884.SARI_02072	(+)
882884.SARI_04383	(+)
882884.SARI_00918	(+)
882884.SARI_04388	(+)
882884.SARI_01376	(+)
882884.SARI_01197	(+)
882884.SARI_00354	(+)
882884.SARI_00822	(+)
882884.SARI_04585	(+)
882884.SARI_04030	(+)
882884.SARI_02467	(+)
882884.SARI_03596	(+)
882884.SARI_03491	(+)
882884.SARI_02243	(+)
882884.SARI_00888	(+)				not used
882884.SARI_03877	(+)
882884.SARI_03907	(+)
882884.SARI_04040	(+)
882884.SARI_01349	(+)
882884.SARI_01346	(+)
882884.SARI_04309	(+)
882884.SARI_02735	(+)
882884.SARI_00340	(+)
882884.SARI_04546	(+)
882884.SARI_04622	(+)
882884.SARI_03690	(+)
882884.SARI_03055	(+)
882884.SARI_03875	(+)
882884.SARI_03275	(+)
882884.SARI_02896	(+)
882884.SARI_02658	(+)
882884.SARI_03473	(+)
882884.SARI_01577	(+)
882884.SARI_03573	(+)
882884.SARI_01734	(+)				not used
882884.SARI_03408	(+)				not used
882884.SARI_01682	(+)
882884.SARI_01534	(+)
882884.SARI_04490	(+)
882884.SARI_00795	(+)
882884.SARI_03464	(+)
882884.SARI_02314	(+)
882884.SARI_04592	(+)
882884.SARI_02795	(+)
882884.SARI_03289	(+)
882884.SARI_03812	(+)				not used
882884.SARI_03407	(+)
882884.SARI_00103	(+)
882884.SARI_03969	(+)
882884.SARI_04161	(+)
882884.SARI_03678	(+)
882884.SARI_00071	(+)
882884.SARI_00745	(+)
882884.SARI_04159	(+)
882884.SARI_00471	(+)
882884.SARI_03784	(+)
882884.SARI_03780	(+)
882884.SARI_04023	(+)
882884.SARI_03893	(+)
882884.SARI_02419	(+)
882884.SARI_03327	(+)
882884.SARI_03320	(+)
882884.SARI_02122	(+)
882884.SARI_02128	(+)				not used
882884.SARI_00731	(+)				not used
882884.SARI_02548	(+)
882884.SARI_01419	(+)
882884.SARI_01148	(+)
882884.SARI_03851	(+)
882884.SARI_01806	(+)
882884.SARI_03798	(+)
882884.SARI_03796	(+)
882884.SARI_04563	(+)
882884.SARI_04567	(+)
882884.SARI_02205	(+)
882884.SARI_02209	(+)
882884.SARI_01047	(+)
882884.SARI_01497	(+)				not used
882884.SARI_00898	(+)
882884.SARI_01309	(+)				not used
882884.SARI_00875	(+)
882884.SARI_03631	(+)
882884.SARI_01473	(+)
882884.SARI_04175	(+)
882884.SARI_00450	(+)
882884.SARI_04195	(+)
882884.SARI_00057	(+)
882884.SARI_00448	(+)
882884.SARI_02435	(+)
882884.SARI_04359	(+)
882884.SARI_03349	(+)
882884.SARI_02108	(+)
882884.SARI_03480	(+)
882884.SARI_04598	(+)
882884.SARI_04156	(+)
882884.SARI_01318	(+)
882884.SARI_04213	(+)
882884.SARI_01468	(+)
882884.SARI_02339	(+)
882884.SARI_01861	(+)
882884.SARI_04167	(+)
882884.SARI_00425	(+)
882884.SARI_00422	(+)
882884.SARI_04183	(+)				not used
882884.SARI_04340a	(+)
882884.SARI_00232	(+)
882884.SARI_00855	(+)
882884.SARI_00851	(+)
882884.SARI_01125	(+)
882884.SARI_00988	(+)
882884.SARI_01293	(+)
882884.SARI_00217	(+)
882884.SARI_00528	(+)
882884.SARI_00436	(+)
882884.SARI_03637	(+)
882884.SARI_04536	(+)
882884.SARI_02905	(+)
882884.SARI_03360	(+)
882884.SARI_00662	(+)
882884.SARI_02013	(+)
882884.SARI_04362	(+)
882884.SARI_01663	(+)
882884.SARI_04467	(+)
882884.SARI_01069	(+)
882884.SARI_01447	(+)
882884.SARI_03624	(+)
882884.SARI_02574	(+)
882884.SARI_02487	(+)
882884.SARI_03375	(+)
882884.SARI_02716	(+)
882884.SARI_02711	(+)
882884.SARI_02033	(+)
882884.SARI_02026	(+)
882884.SARI_00088	(+)
882884.SARI_01619	(+)
882884.SARI_02384	(+)
882884.SARI_02598	(+)
882884.SARI_04619	(+)
882884.SARI_04650	(+)
882884.SARI_01650	(+)
882884.SARI_00230	(+)
882884.SARI_00417	(+)
882884.SARI_00524	(+)
882884.SARI_00095	(+)
882884.SARI_00098	(+)
882884.SARI_00703	(+)
882884.SARI_04469	(+)
882884.SARI_04395	(+)				not used
882884.SARI_01400	(+)
882884.SARI_00099	(+)
882884.SARI_01158	(+)
882884.SARI_03110	(+)
882884.SARI_03842	(+)
882884.SARI_01555	(+)
882884.SARI_03975	(+)				not used
882884.SARI_01957	(+)
882884.SARI_03608	(+)
882884.SARI_03605	(+)
882884.SARI_03771	(+)
882884.SARI_04380	(+)
882884.SARI_02951	(+)
882884.SARI_03158	(+)
882884.SARI_00606	(+)
882884.SARI_03153	(+)
882884.SARI_03550	(+)
882884.SARI_02736	(+)
882884.SARI_03551	(+)
882884.SARI_02707	(+)				not used
882884.SARI_04089	(+)
882884.SARI_01706	(+)
882884.SARI_01704	(+)				not used
882884.SARI_01092	(+)
882884.SARI_01147	(+)
882884.SARI_04676	(+)
882884.SARI_03957	(+)
882884.SARI_01890	(+)
882884.SARI_00167	(+)
882884.SARI_03941	(+)
882884.SARI_03494	(+)
882884.SARI_03497	(+)
882884.SARI_02940	(+)
882884.SARI_03838	(+)
882884.SARI_04278	(+)
882884.SARI_03237	(+)
882884.SARI_04516	(+)
882884.SARI_03150	(+)
882884.SARI_01080	(+)
882884.SARI_00370	(+)
882884.SARI_01570	(+)
882884.SARI_00286	(+)
882884.SARI_04351	(+)
882884.SARI_01970	(+)
882884.SARI_00573	(+)
882884.SARI_00023	(+)
882884.SARI_03003	(+)
882884.SARI_02535	(+)
882884.SARI_02537	(+)
882884.SARI_04291	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 2.0 (20/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================