Metamenu

Effective results for Paenibacillus polymyxa SC2 (eggnog40)

Summary

Number of putative secreted proteins: 113
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 113 proteins (5 high, 108 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
886882.PPSC2_c2714(PF08244) (PF00251)ER
886882.PPSC2_c5221(PF01373) (PF03423)ER
886882.PPSC2_c0494(PF02156)ER
886882.PPSC2_c5260(PF08279)mitochondrial
886882.PPSC2_c1947(PF08279)ER
886882.PPSC2_c1833(PF09992)ER
886882.PPSC2_c1215(PF02156)ER
886882.PPSC2_c5350(PF08279)(mitochondrial)
886882.PPSC2_c4181(PF00367)ER
886882.PPSC2_c3342(PF00367)ER; (ER)
886882.PPSC2_c0310(PF00367)(ER)
886882.PPSC2_c5412(PF03442)ER
886882.PPSC2_c1535(PF09992)ER
886882.PPSC2_c0751(PF08244) (PF00251)(mitochondrial)
886882.PPSC2_c5099(PF06013)(mitochondrial)
886882.PPSC2_c4053(PF00367)(ER); (mitochondrial)
886882.PPSC2_c2848(PF03442)ER
886882.PPSC2_c0597(PF02156)ER
886882.PPSC2_c3678PF01357(mitochondrial)
886882.PPSC2_c3929(PF08279)(ER)
886882.PPSC2_c2728(PF06925) (PF04101)
886882.PPSC2_c2715(PF08244) (PF00251)
886882.PPSC2_c2716(PF08244) (PF00251)
886882.PPSC2_c4702(PF08244) (PF00251)
886882.PPSC2_c2555(PF16875) (PF16874)
886882.PPSC2_c0734(PF08279)(mitochondrial)
886882.PPSC2_c0616(PF06925) (PF04101)
886882.PPSC2_c4289(PF08279)(ER)
886882.PPSC2_c2759(PF16875) (PF16874)
886882.PPSC2_c1458(PF06925) (PF04101)
886882.PPSC2_c2647(PF08244) (PF00251)
886882.PPSC2_c1054(PF08244) (PF00251)
886882.PPSC2_c1053(PF08244) (PF00251)
886882.PPSC2_c0785(PF16875) (PF16874)
886882.PPSC2_c2446(PF00190)(ER)
886882.PPSC2_c4122(PF01702)(mitochondrial)
886882.PPSC2_c0338(PF08244) (PF00251)
886882.PPSC2_c2730(PF06925) (PF04101)
886882.PPSC2_c0590(PF16875) (PF16874)
886882.PPSC2_c1638(PF06013)
886882.PPSC2_c3660(PF14552)
886882.PPSC2_c4860(PF02156)
886882.PPSC2_c2710(PF00165)
886882.PPSC2_c1175PF01857
886882.PPSC2_c1285PF02893
886882.PPSC2_c5291(PF08279)
886882.PPSC2_c3548(PF04101)
886882.PPSC2_c1611(PF06013)
886882.PPSC2_c1614(PF01885)
886882.PPSC2_c0566(PF08279)
886882.PPSC2_c1140(PF00367)
886882.PPSC2_c1142(PF00251)
886882.PPSC2_c1389(PF00367)
886882.PPSC2_c3424(PF00190)
886882.PPSC2_c2952(PF13518)
886882.PPSC2_c0555(PF04101)
886882.PPSC2_c1152(PF08279)
886882.PPSC2_c3708(PF04446)
886882.PPSC2_c3385(PF02938)
886882.PPSC2_c3416(PF02156)
886882.PPSC2_c3138(PF13518)
886882.PPSC2_c5241(PF02403)
886882.PPSC2_c4284(PF00367)
886882.PPSC2_c4285(PF13204)
886882.PPSC2_c3085(PF08279)
886882.PPSC2_c0991(PF06013)
886882.PPSC2_c0269(PF08271)
886882.PPSC2_c1587(PF00707)
886882.PPSC2_c0676(PF00367)
886882.PPSC2_c4198(PF00367)
886882.PPSC2_c3207(PF13518)
886882.PPSC2_c2004(PF08279)
886882.PPSC2_c1626PF12640
886882.PPSC2_c3237(PF03266)
886882.PPSC2_c3837(PF00367)
886882.PPSC2_c1695(PF13518)
886882.PPSC2_c0252(PF13518)
886882.PPSC2_c0092(PF02403)
886882.PPSC2_c0096(PF13518)
886882.PPSC2_c0659(PF10435)
886882.PPSC2_c1685(PF13518)
886882.PPSC2_c2799(PF09992)
886882.PPSC2_c2663(PF14552)
886882.PPSC2_c1462(PF00707)
886882.PPSC2_c1866(PF08279)
886882.PPSC2_c4093(PF06013)
886882.PPSC2_c5309(PF08279)
886882.PPSC2_c1678(PF06013)
886882.PPSC2_c2491(PF06013)not used
886882.PPSC2_c0786(PF00367)
886882.PPSC2_c4044(PF08279)
886882.PPSC2_c1661PF12640
886882.PPSC2_c1794(PF00367)
886882.PPSC2_c1791(PF14552)
886882.PPSC2_c0339(PF00367)
886882.PPSC2_c0207(PF01702)
886882.PPSC2_c0209(PF01702)
886882.PPSC2_c5323(PF09992)
886882.PPSC2_c2459(PF00190)
886882.PPSC2_c3905(PF05870)
886882.PPSC2_c0691(PF05870)
886882.PPSC2_c4441(PF00367)
886882.PPSC2_c4449(PF08279)
886882.PPSC2_c3867(PF06013)
886882.PPSC2_c2417(PF08279)
886882.PPSC2_c2207(PF06013)
886882.PPSC2_c2208(PF06013)
886882.PPSC2_c2429(PF08279)
886882.PPSC2_c1682(PF01885)
886882.PPSC2_c0919(PF08279)
886882.PPSC2_c4925(PF09992)
886882.PPSC2_c4454(PF13204)
886882.PPSC2_c4102(PF02938)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================