Effective results for Hylemonella gracilis ATCC 19624 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
887062.HGR_09349				(PF12729)	ER
887062.HGR_05636				(PF12729)	ER
887062.HGR_01247				(PF12729)	(ER); ER
887062.HGR_02868				(PF12729)	(ER)
887062.HGR_00645				(PF12729)	ER
887062.HGR_05781				(PF12729)	ER
887062.HGR_15879				(PF12729)	ER
887062.HGR_01694				(PF12729)	ER
887062.HGR_12387				(PF12729)	(mitochondrial)
887062.HGR_02967				(PF12729)	(ER)
887062.HGR_05641				(PF12729)	ER
887062.HGR_00135				(PF13582)	(mitochondrial)
887062.HGR_01954				(PF12729)	ER; (ER)
887062.HGR_05344				(PF12729)	(ER); (mitochondrial)
887062.HGR_09890				(PF12729)	(mitochondrial); mitochondrial
887062.HGR_15909				(PF12729)	ER; (ER)
887062.HGR_16128				(PF12729)	(ER); (mitochondrial)
887062.HGR_14089				(PF12729)	(mitochondrial)
887062.HGR_14164				(PF12729)	ER
887062.HGR_05464				(PF12729)	ER
887062.HGR_11780				(PF12729)	ER
887062.HGR_14849				(PF12729)	ER
887062.HGR_04668				(PF12729)	ER
887062.HGR_04014				(PF02201)	(mitochondrial)
887062.HGR_08064				(PF13332)	(plastid)
887062.HGR_14199				PF07544	plastid
887062.HGR_01427				(PF12729)	(ER)
887062.HGR_16043				(PF04305)	(ER)
887062.HGR_02133				(PF04305)
887062.HGR_14499				(PF02201)
887062.HGR_11381				(PF12471)	not used
887062.HGR_11376				(PF07958)
887062.HGR_12607				(PF13332)	not used
887062.HGR_03162				(PF12729)
887062.HGR_03157				(PF04305)	not used
887062.HGR_01142				(PF13332)	not used
887062.HGR_14204				(PF12729)
887062.HGR_02123				(PF12729)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================