Effective results for Actinobacillus ureae ATCC 25976 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 28 proteins (9 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
887324.HMPREF0027_1992(PF05992)ER
887324.HMPREF0027_0671PF12762(mitochondrial)
887324.HMPREF0027_2273(PF00194)(ER)
887324.HMPREF0027_1254(PF05127)(ER)
887324.HMPREF0027_1001(PF05872)(plastid)
887324.HMPREF0027_1002(PF05872)ER; not used
887324.HMPREF0027_1008PF12762(ER)
887324.HMPREF0027_2464PF12762not used
887324.HMPREF0027_0024PF12762
887324.HMPREF0027_0730PF12762not used
887324.HMPREF0027_2474(PF10063)not used
887324.HMPREF0027_2274(PF00194)
887324.HMPREF0027_1255(PF05127)
887324.HMPREF0027_0257(PF05992)
887324.HMPREF0027_1390(PF05495)
887324.HMPREF0027_0522(PF00343)
887324.HMPREF0027_1003(PF05872)
887324.HMPREF0027_1005PF12762not used
887324.HMPREF0027_0163(PF01501)
887324.HMPREF0027_1591PF12762
887324.HMPREF0027_1405(PF00343)
887324.HMPREF0027_1404(PF00343)
887324.HMPREF0027_1406(PF00343)
887324.HMPREF0027_2216(PF01501)
887324.HMPREF0027_1326(PF01501)
887324.HMPREF0027_0438PF12762
887324.HMPREF0027_2428(PF04218)
887324.HMPREF0027_0442PF12762not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================