Effective results for Lachnoanaerobaculum saburreum DSM 3986 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 29 proteins (13 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
887325.HMPREF0381_1386				PF06541	(mitochondrial); mitochondrial
887325.HMPREF0381_0257				(PF03083)	(ER)
887325.HMPREF0381_2399				PF06541	ER
887325.HMPREF0381_1069				(PF13151)	(mitochondrial)
887325.HMPREF0381_2584				PF06541	ER; (ER)
887325.HMPREF0381_2934				(PF02522)	(mitochondrial)
887325.HMPREF0381_1570				PF06541	ER
887325.HMPREF0381_1676				(PF11175)	(plastid)
887325.HMPREF0381_1485				(PF12847)	(mitochondrial)
887325.HMPREF0381_2585				PF06541	ER; not used
887325.HMPREF0381_1571				PF06541	(plastid)
887325.HMPREF0381_2850				(PF02522)
887325.HMPREF0381_2944				(PF02522)
887325.HMPREF0381_2598				PF16804
887325.HMPREF0381_2591				PF16804
887325.HMPREF0381_2841				(PF03083)
887325.HMPREF0381_2933				(PF02522)	not used
887325.HMPREF0381_1590				(PF14512)
887325.HMPREF0381_0799				PF00627
887325.HMPREF0381_1361				(PF16889)
887325.HMPREF0381_1362				(PF16889)
887325.HMPREF0381_0094				(PF02732)
887325.HMPREF0381_1798				(PF12847)
887325.HMPREF0381_2174				PF01885
887325.HMPREF0381_1893				PF01885
887325.HMPREF0381_2180				PF01885
887325.HMPREF0381_2352				PF01885
887325.HMPREF0381_1041				(PF14512)
887325.HMPREF0381_0242				(PF11175)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================