Effective results for Streptococcus oralis ATCC 49296 (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 96
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 18 proteins (2 high, 16 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888049.HMPREF8578_1000			+		ER
888049.HMPREF8578_1819			+		ER
888049.HMPREF8578_0569			+		(mitochondrial)
888049.HMPREF8578_0645				(PF00344)	mitochondrial
888049.HMPREF8578_1345			+		ER
888049.HMPREF8578_1909			+		ER
888049.HMPREF8578_0505			+		mitochondrial; (mitochondrial)
888049.HMPREF8578_1357			+		ER
888049.HMPREF8578_1911			+		(mitochondrial); (plastid)
888049.HMPREF8578_1637			+		ER
888049.HMPREF8578_1725			+		ER
888049.HMPREF8578_1938			+		ER
888049.HMPREF8578_1399			+		ER
888049.HMPREF8578_1396			+		ER
888049.HMPREF8578_1395			+		ER
888049.HMPREF8578_0478				(PF05257)	ER
888049.HMPREF8578_0851			+		ER
888049.HMPREF8578_1018				(PF05257)	mitochondrial
888049.HMPREF8578_1402			+		(mitochondrial)
888049.HMPREF8578_0442			+		ER
888049.HMPREF8578_0912				(PF00344)	(ER)
888049.HMPREF8578_0061				(PF03644)	mitochondrial
888049.HMPREF8578_1185			+		ER
888049.HMPREF8578_0453			+		mitochondrial; (mitochondrial)
888049.HMPREF8578_0832				PF02916	(mitochondrial)
888049.HMPREF8578_1686				(PF04991)	(ER)
888049.HMPREF8578_1202			+		ER
888049.HMPREF8578_1156			+		ER
888049.HMPREF8578_1505			+		ER
888049.HMPREF8578_1301			+		ER
888049.HMPREF8578_0492				(PF05257)	(ER)
888049.HMPREF8578_0165			+		(mitochondrial)
888049.HMPREF8578_1956			+
888049.HMPREF8578_0750				PF04103
888049.HMPREF8578_0208			+
888049.HMPREF8578_1567			+
888049.HMPREF8578_1561			+
888049.HMPREF8578_1374				(PF01633)
888049.HMPREF8578_1593			+
888049.HMPREF8578_0221			+
888049.HMPREF8578_0644			+
888049.HMPREF8578_0649			+
888049.HMPREF8578_0775				(PF05257)
888049.HMPREF8578_0728			+
888049.HMPREF8578_1124				(PF01633)
888049.HMPREF8578_1129			+
888049.HMPREF8578_0656			+
888049.HMPREF8578_1286			+
888049.HMPREF8578_0392			+
888049.HMPREF8578_0246				(PF00847)
888049.HMPREF8578_1389			+
888049.HMPREF8578_0348				(PF03596)
888049.HMPREF8578_0893			+
888049.HMPREF8578_1065			+
888049.HMPREF8578_0606			+
888049.HMPREF8578_0604			+
888049.HMPREF8578_0268			+
888049.HMPREF8578_0966			+
888049.HMPREF8578_0077			+
888049.HMPREF8578_0473			+
888049.HMPREF8578_0611			+
888049.HMPREF8578_0617			+
888049.HMPREF8578_0109			+
888049.HMPREF8578_1425			+
888049.HMPREF8578_1082			+
888049.HMPREF8578_1884			+
888049.HMPREF8578_1663			+
888049.HMPREF8578_1669			+
888049.HMPREF8578_0130			+
888049.HMPREF8578_0821			+
888049.HMPREF8578_0013			+
888049.HMPREF8578_1513			+
888049.HMPREF8578_1050			+
888049.HMPREF8578_1504			+
888049.HMPREF8578_0455			+
888049.HMPREF8578_0839				(PF04991)
888049.HMPREF8578_0214			+
888049.HMPREF8578_1261			+
888049.HMPREF8578_1861			+
888049.HMPREF8578_1190			+
888049.HMPREF8578_0480			+
888049.HMPREF8578_1684				(PF04991)
888049.HMPREF8578_1683				(PF04991)
888049.HMPREF8578_1853			+
888049.HMPREF8578_1855			+
888049.HMPREF8578_0664			+
888049.HMPREF8578_0921			+
888049.HMPREF8578_0141			+
888049.HMPREF8578_1775			+
888049.HMPREF8578_1844				(PF03596)
888049.HMPREF8578_0953			+
888049.HMPREF8578_0778			+
888049.HMPREF8578_0178			+
888049.HMPREF8578_0015			+
888049.HMPREF8578_0014			+
888049.HMPREF8578_0782			+
888049.HMPREF8578_0301			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================