Metamenu

Effective results for Capnocytophaga sp. oral taxon 338 str. F0234 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 14 proteins (2 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
888059.HMPREF9071_0573(PF01431) (PF05649)ER
888059.HMPREF9071_0562(PF01431) (PF05649)ER
888059.HMPREF9071_0559(PF01431) (PF05649)(ER)
888059.HMPREF9071_0371(PF06414)(mitochondrial)
888059.HMPREF9071_0566(PF05649)ER
888059.HMPREF9071_0554(PF14771)ER
888059.HMPREF9071_0565(PF01431) (PF05649)
888059.HMPREF9071_2309(PF06414)not used
888059.HMPREF9071_0807(PF05693)
888059.HMPREF9071_0487(PF00165)
888059.HMPREF9071_0482(PF04383)not used
888059.HMPREF9071_2107(PF04383)
888059.HMPREF9071_2135PF15711
888059.HMPREF9071_0185PF07707

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================