Effective results for Kingella denitrificans ATCC 33394 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 30 proteins (9 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888741.HMPREF9098_0198				(PF03162)	ER
888741.HMPREF9098_1037				(PF08238)	(mitochondrial)
888741.HMPREF9098_0543				(PF08238)	ER; mitochondrial
888741.HMPREF9098_2080				(PF08238)	(mitochondrial)
888741.HMPREF9098_2425				(PF03083)	(ER)
888741.HMPREF9098_2515				PF12762	ER; (ER)
888741.HMPREF9098_2075				(PF08238)	ER
888741.HMPREF9098_2076				(PF08238)	ER
888741.HMPREF9098_1036				(PF08238)	(ER)
888741.HMPREF9098_2416				(PF01755)	(mitochondrial)
888741.HMPREF9098_1991				(PF08238)	plastid
888741.HMPREF9098_1608				PF12762	(ER)
888741.HMPREF9098_1045				PF12762
888741.HMPREF9098_0474				(PF05167)
888741.HMPREF9098_1135				PF12762
888741.HMPREF9098_0460				(PF08238)
888741.HMPREF9098_1020				(PF03083)
888741.HMPREF9098_1805				PF12762
888741.HMPREF9098_1817				PF12762
888741.HMPREF9098_0324				(PF05167)
888741.HMPREF9098_1799				PF12762	not used
888741.HMPREF9098_1178				(PF08238)
888741.HMPREF9098_2414				(PF01755)
888741.HMPREF9098_2415				(PF05704)
888741.HMPREF9098_2081				(PF08238)
888741.HMPREF9098_2407				(PF01755)
888741.HMPREF9098_1421				(PF08238)
888741.HMPREF9098_0280				(PF08238)
888741.HMPREF9098_0728				PF12762	not used
888741.HMPREF9098_1894				PF12762

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================