Effective results for Streptococcus peroris ATCC 700780 (eggnog40)

Summary

Number of putative secreted proteins: 75
- Predicted by T4SEpre: 82
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 7 proteins (1 high, 6 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
888746.HMPREF9180_0166			+		ER
888746.HMPREF9180_0343			+		ER
888746.HMPREF9180_0564			+		ER
888746.HMPREF9180_0115			+		ER
888746.HMPREF9180_0135			+		ER
888746.HMPREF9180_1335			+		ER
888746.HMPREF9180_0591			+		mitochondrial
888746.HMPREF9180_0599			+		ER
888746.HMPREF9180_0458				(PF04991)	(ER)
888746.HMPREF9180_1538			+		(mitochondrial); (plastid)
888746.HMPREF9180_1192			+		mitochondrial
888746.HMPREF9180_0264			+		ER
888746.HMPREF9180_0134			+		ER
888746.HMPREF9180_1612			+		mitochondrial
888746.HMPREF9180_1274			+		mitochondrial; (mitochondrial)
888746.HMPREF9180_0013			+		ER
888746.HMPREF9180_1263			+		ER
888746.HMPREF9180_0813			+		ER
888746.HMPREF9180_0815			+		ER
888746.HMPREF9180_1492			+		ER
888746.HMPREF9180_0727			+		ER
888746.HMPREF9180_0722			+		(mitochondrial)
888746.HMPREF9180_0820				(PF03083)	ER
888746.HMPREF9180_0534			+		mitochondrial
888746.HMPREF9180_1016			+		ER
888746.HMPREF9180_0292			+		ER
888746.HMPREF9180_0353			+		ER
888746.HMPREF9180_1100			+		ER
888746.HMPREF9180_1584				PF02916	(ER)
888746.HMPREF9180_0163			+		(ER)
888746.HMPREF9180_1178			+		(ER)
888746.HMPREF9180_1432			+		(mitochondrial)
888746.HMPREF9180_0201			+		(mitochondrial)
888746.HMPREF9180_1507			+		(ER)
888746.HMPREF9180_0516			+		(mitochondrial)
888746.HMPREF9180_1627			+
888746.HMPREF9180_0182			+
888746.HMPREF9180_1379			+
888746.HMPREF9180_1371				(PF03083)
888746.HMPREF9180_0157			+
888746.HMPREF9180_0405			+
888746.HMPREF9180_0080			+
888746.HMPREF9180_0085			+
888746.HMPREF9180_1563			+
888746.HMPREF9180_1164			+
888746.HMPREF9180_1303			+
888746.HMPREF9180_0098			+
888746.HMPREF9180_1570			+
888746.HMPREF9180_0441			+
888746.HMPREF9180_0315			+
888746.HMPREF9180_0944				(PF05495)
888746.HMPREF9180_0436			+
888746.HMPREF9180_1381			+
888746.HMPREF9180_0062			+
888746.HMPREF9180_1050			+
888746.HMPREF9180_1456			+
888746.HMPREF9180_0105			+
888746.HMPREF9180_1535			+
888746.HMPREF9180_1537			+
888746.HMPREF9180_0665			+
888746.HMPREF9180_0465				(PF04991)
888746.HMPREF9180_0466				(PF04991)
888746.HMPREF9180_0486			+
888746.HMPREF9180_0483			+
888746.HMPREF9180_0873			+
888746.HMPREF9180_1295			+
888746.HMPREF9180_1543			+
888746.HMPREF9180_1095			+
888746.HMPREF9180_0236			+
888746.HMPREF9180_1247			+
888746.HMPREF9180_0831			+
888746.HMPREF9180_1013			+
888746.HMPREF9180_0527			+
888746.HMPREF9180_0747			+
888746.HMPREF9180_1034			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================