Effective results for Plautia stali symbiont (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
891974.Pstas_010100013644				(PF00834)	(ER)
891974.Pstas_010100005864				(PF08125)	mitochondrial
891974.Pstas_010100007528				(PF08125)	ER
891974.Pstas_010100005562				(PF06779)	ER
891974.Pstas_010100013609				(PF01226)	(mitochondrial)
891974.Pstas_010100019789				(PF00959)	(mitochondrial)
891974.Pstas_010100017830				(PF06779)	ER
891974.Pstas_010100005557				(PF06779)	(mitochondrial)
891974.Pstas_010100023749				(PF08125)
891974.Pstas_010100018250				(PF00959)
891974.Pstas_010100005859				(PF08125)
891974.Pstas_010100016576				(PF05704)
891974.Pstas_010100002482				(PF00959)
891974.Pstas_010100009433				(PF01226)
891974.Pstas_010100002007				(PF10685)	not used
891974.Pstas_010100010395				(PF08125)
891974.Pstas_010100022047				(PF00834)
891974.Pstas_010100015336				(PF10685)
891974.Pstas_010100015326				(PF16485)
891974.Pstas_010100014204				(PF01226)
891974.Pstas_010100000645				(PF14328)
891974.Pstas_010100007620				(PF10685)	not used
891974.Pstas_010100013604				(PF01226)
891974.Pstas_010100014499				(PF08125)
891974.Pstas_010100020254				(PF01226)
891974.Pstas_010100014114				(PF00959)
891974.Pstas_010100014901				(PF00834)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================