Effective results for Streptococcus sp. oral taxon 056 str. F0418 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 28 proteins (1 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
904294.HMPREF9182_1096			+		mitochondrial
904294.HMPREF9182_1874			+		ER
904294.HMPREF9182_0431			+		ER
904294.HMPREF9182_1274			+		(mitochondrial)
904294.HMPREF9182_1857			+		ER
904294.HMPREF9182_1475			+		mitochondrial; (mitochondrial)
904294.HMPREF9182_1826			+		ER
904294.HMPREF9182_2023			+		ER
904294.HMPREF9182_0067			+		ER
904294.HMPREF9182_1137				PF02916	(mitochondrial)
904294.HMPREF9182_0879			+		ER
904294.HMPREF9182_0508			+		ER
904294.HMPREF9182_0539			+		ER
904294.HMPREF9182_0787			+		ER
904294.HMPREF9182_0837			+		ER
904294.HMPREF9182_1197				(PF05257)	ER
904294.HMPREF9182_0564				(PF05257)	ER
904294.HMPREF9182_0819			+		(mitochondrial)
904294.HMPREF9182_1361				(PF00344)	mitochondrial
904294.HMPREF9182_1213			+		ER
904294.HMPREF9182_1566			+		(ER)
904294.HMPREF9182_0101			+		(ER)
904294.HMPREF9182_0106			+		ER
904294.HMPREF9182_1746			+		ER
904294.HMPREF9182_0801			+		ER
904294.HMPREF9182_1224				(PF05257)	ER
904294.HMPREF9182_2043				(PF00344)	(mitochondrial)
904294.HMPREF9182_1386				(PF01610)	(mitochondrial)
904294.HMPREF9182_1158			+		(mitochondrial)
904294.HMPREF9182_1957				(PF01610)	(mitochondrial)
904294.HMPREF9182_0944			+		(mitochondrial)
904294.HMPREF9182_0486			+		(ER)
904294.HMPREF9182_1360			+		(mitochondrial)
904294.HMPREF9182_1743			+		(plastid)
904294.HMPREF9182_1663			+
904294.HMPREF9182_1669			+
904294.HMPREF9182_1388			+
904294.HMPREF9182_1387				(PF01610)
904294.HMPREF9182_1415			+
904294.HMPREF9182_1008			+
904294.HMPREF9182_1064			+
904294.HMPREF9182_2008			+
904294.HMPREF9182_0646			+
904294.HMPREF9182_1602			+
904294.HMPREF9182_1295			+
904294.HMPREF9182_2039				(PF01501)
904294.HMPREF9182_0718			+
904294.HMPREF9182_0403				(PF09359)
904294.HMPREF9182_1107			+
904294.HMPREF9182_1103			+
904294.HMPREF9182_0087				(PF01501)
904294.HMPREF9182_0667			+
904294.HMPREF9182_0665			+
904294.HMPREF9182_0984			+
904294.HMPREF9182_1451			+
904294.HMPREF9182_0690			+
904294.HMPREF9182_1587				(PF01351)
904294.HMPREF9182_0462			+
904294.HMPREF9182_1125				(PF05704)
904294.HMPREF9182_1336			+
904294.HMPREF9182_1934			+
904294.HMPREF9182_1807				(PF01610)
904294.HMPREF9182_0041				(PF01351)
904294.HMPREF9182_0040				(PF01351)
904294.HMPREF9182_0454				(PF01610)
904294.HMPREF9182_0453				(PF01610)
904294.HMPREF9182_1030			+
904294.HMPREF9182_0218			+
904294.HMPREF9182_1963			+
904294.HMPREF9182_0033			+
904294.HMPREF9182_0534				(PF05257)
904294.HMPREF9182_1958				(PF01610)
904294.HMPREF9182_0200			+
904294.HMPREF9182_0337			+
904294.HMPREF9182_1553			+
904294.HMPREF9182_1178			+
904294.HMPREF9182_0838			+
904294.HMPREF9182_0788			+
904294.HMPREF9182_0162			+
904294.HMPREF9182_1768			+
904294.HMPREF9182_1994				(PF01610)	not used
904294.HMPREF9182_1570			+
904294.HMPREF9182_1366			+
904294.HMPREF9182_2056			+
904294.HMPREF9182_1565			+
904294.HMPREF9182_1562				(PF09818)
904294.HMPREF9182_1561				(PF09818)
904294.HMPREF9182_1183				(PF02938)
904294.HMPREF9182_0617			+
904294.HMPREF9182_2042				(PF01501)
904294.HMPREF9182_1425				(PF09359)
904294.HMPREF9182_0340			+
904294.HMPREF9182_1725				(PF02938)
904294.HMPREF9182_0287			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================