Metamenu

Effective results for Oribacterium sp. oral taxon 108 str. F0425 (eggnog40)

Summary

Number of putative secreted proteins: 71
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 71 proteins (17 high, 54 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
904296.HMPREF9124_0563(PF01000) (PF01193) (PF03118)
904296.HMPREF9124_0310(PF03083)(ER)
904296.HMPREF9124_0313(PF13173)(mitochondrial)
904296.HMPREF9124_0951(PF03577)ER
904296.HMPREF9124_1941(PF01000) (PF01193) (PF03118)
904296.HMPREF9124_0292(PF02361)(ER); ER
904296.HMPREF9124_0266(PF08843)(mitochondrial)
904296.HMPREF9124_0263(PF02361)(ER)
904296.HMPREF9124_0388(PF02361)ER
904296.HMPREF9124_0027(PF02361)ER
904296.HMPREF9124_1671(PF13173)(mitochondrial)
904296.HMPREF9124_0989(PF13173)(mitochondrial)
904296.HMPREF9124_2154PF13151(mitochondrial)
904296.HMPREF9124_0980(PF13173)(mitochondrial)
904296.HMPREF9124_0450(PF03083)(ER)
904296.HMPREF9124_0431(PF02361)(ER)
904296.HMPREF9124_0416(PF13173)(mitochondrial)
904296.HMPREF9124_0853(PF13240)(mitochondrial)
904296.HMPREF9124_1362(PF14512)
904296.HMPREF9124_0413(PF08843)
904296.HMPREF9124_2060(PF02361)
904296.HMPREF9124_0312(PF13173)
904296.HMPREF9124_0317PF11443
904296.HMPREF9124_1953(PF02361)
904296.HMPREF9124_0149PF13151not used
904296.HMPREF9124_1696(PF01661)
904296.HMPREF9124_1695(PF01661)
904296.HMPREF9124_1054(PF13173)
904296.HMPREF9124_2047(PF13173)
904296.HMPREF9124_0150PF13151not used
904296.HMPREF9124_0420(PF02361)
904296.HMPREF9124_2362(PF13240)
904296.HMPREF9124_2361(PF13240)
904296.HMPREF9124_2155(PF13292)
904296.HMPREF9124_0322(PF13173)
904296.HMPREF9124_1480(PF13173)
904296.HMPREF9124_2014(PF08843)
904296.HMPREF9124_0052(PF13240)
904296.HMPREF9124_1874(PF13292)
904296.HMPREF9124_0478(PF03118)
904296.HMPREF9124_1701PF13151
904296.HMPREF9124_0788(PF04383)
904296.HMPREF9124_0410PF13151
904296.HMPREF9124_2173(PF04383)
904296.HMPREF9124_2357(PF13240)
904296.HMPREF9124_0044(PF03577)
904296.HMPREF9124_0516PF04991
904296.HMPREF9124_1249(PF01661)
904296.HMPREF9124_0384(PF08843)
904296.HMPREF9124_0062(PF12646)
904296.HMPREF9124_0714PF00380
904296.HMPREF9124_0713PF00572
904296.HMPREF9124_0661PF04991
904296.HMPREF9124_0660PF04991
904296.HMPREF9124_2256(PF13292)
904296.HMPREF9124_0720PF00572not used
904296.HMPREF9124_0721PF00380
904296.HMPREF9124_0659PF04991
904296.HMPREF9124_0655PF04991
904296.HMPREF9124_0657PF04991
904296.HMPREF9124_1838(PF13173)
904296.HMPREF9124_1835(PF01661)
904296.HMPREF9124_2136(PF13173)
904296.HMPREF9124_0006PF04991
904296.HMPREF9124_0732(PF08843)
904296.HMPREF9124_1164(PF03577)
904296.HMPREF9124_1767(PF03054)
904296.HMPREF9124_1766(PF03054)
904296.HMPREF9124_1768(PF03054)
904296.HMPREF9124_2268(PF14512)
904296.HMPREF9124_0022(PF08843)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================