Metamenu

Effective results for Helicobacter pylori SouthAfrica7 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 103
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 27 proteins (0 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
907239.HPSA_00650+ER
907239.HPSA_04880+(ER)
907239.HPSA_07815+ER
907239.HPSA_00515+ER
907239.HPSA_04180+ER
907239.HPSA_02450+ER
907239.HPSA_07690+ER
907239.HPSA_01395(PF01535)ER
907239.HPSA_03890+ER
907239.HPSA_06590+ER
907239.HPSA_00835+ER
907239.HPSA_05535+ER
907239.HPSA_05825+ER
907239.HPSA_07475+ER
907239.HPSA_07275+ER
907239.HPSA_01840+ER; (ER)
907239.HPSA_01265+ER; (ER)
907239.HPSA_00920+ER
907239.HPSA_06890+ER
907239.HPSA_07700+ER
907239.HPSA_03000+ER
907239.HPSA_01640+ER
907239.HPSA_06460+(mitochondrial)
907239.HPSA_01655+mitochondrial; (mitochondrial)
907239.HPSA_00415+ER
907239.HPSA_01200+ER
907239.HPSA_05430+(mitochondrial)
907239.HPSA_02850+(ER)
907239.HPSA_03430+(mitochondrial)
907239.HPSA_04530(PF07510) (PF03235)
907239.HPSA_00610+(mitochondrial)
907239.HPSA_01730+(mitochondrial)
907239.HPSA_02965(PF07510) (PF03235)
907239.HPSA_04935(PF07510) (PF03235)
907239.HPSA_07720+(PF01555)
907239.HPSA_07385(PF07510) (PF03235)
907239.HPSA_04000(PF01755)(mitochondrial)
907239.HPSA_04970(PF07510) (PF03235)
907239.HPSA_04300+(PF01501)
907239.HPSA_03040+(mitochondrial)
907239.HPSA_01335+(PF01555)
907239.HPSA_05205(PF00852)
907239.HPSA_06565+
907239.HPSA_02915(PF01755)
907239.HPSA_07215+
907239.HPSA_00510+
907239.HPSA_01175+
907239.HPSA_02920(PF01755)
907239.HPSA_04620+
907239.HPSA_03880(PF01755)
907239.HPSA_03080(PF00852)
907239.HPSA_00280+
907239.HPSA_01715+
907239.HPSA_04505+
907239.HPSA_00145+
907239.HPSA_05645+
907239.HPSA_01035+
907239.HPSA_07745+
907239.HPSA_00805(PF01501)
907239.HPSA_01040(PF01501)
907239.HPSA_00700+
907239.HPSA_07265(PF01555)
907239.HPSA_02150+
907239.HPSA_02885+
907239.HPSA_07725(PF01555)
907239.HPSA_07470(PF01555)
907239.HPSA_01535+
907239.HPSA_00480(PF01555)
907239.HPSA_01445+
907239.HPSA_00220+
907239.HPSA_04830+
907239.HPSA_05520+
907239.HPSA_07445+
907239.HPSA_04645+
907239.HPSA_08140(PF03981)
907239.HPSA_02195+
907239.HPSA_04135+
907239.HPSA_07670+
907239.HPSA_08150(PF03981)
907239.HPSA_04740+
907239.HPSA_06645+
907239.HPSA_01255+
907239.HPSA_04370+
907239.HPSA_04205+
907239.HPSA_05375(PF01501)
907239.HPSA_05370(PF01501)
907239.HPSA_06070+
907239.HPSA_02355+
907239.HPSA_00460+
907239.HPSA_00465+
907239.HPSA_00860+
907239.HPSA_01315(PF01555)
907239.HPSA_04305+
907239.HPSA_04410+
907239.HPSA_03815+
907239.HPSA_06335+
907239.HPSA_03495+
907239.HPSA_00895+
907239.HPSA_04400+
907239.HPSA_05420+
907239.HPSA_05550+
907239.HPSA_07300+
907239.HPSA_00245(PF01555)
907239.HPSA_00330+
907239.HPSA_04145+
907239.HPSA_06220+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.7 (17/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================