Metamenu

Effective results for Planococcus donghaensis MPA1U2 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 19 proteins (2 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
933115.GPDM_06118(PF01625)ER
933115.GPDM_03560(PF01625)(ER)
933115.GPDM_01210(PF06280)ER
933115.GPDM_01215(PF06280)ER
933115.GPDM_01505(PF02681)ER
933115.GPDM_05446(PF13455)mitochondrial
933115.GPDM_06855(PF03630)(plastid)
933115.GPDM_13476(PF08732)
933115.GPDM_06695PF02037
933115.GPDM_14016(PF14792)
933115.GPDM_00305PF08696
933115.GPDM_12252(PF03161)
933115.GPDM_01875(PF01625)
933115.GPDM_12681(PF01625)
933115.GPDM_13506(PF01625)
933115.GPDM_04424(PF08271)
933115.GPDM_15319(PF14328)
933115.GPDM_12946(PF02681)
933115.GPDM_13541(PF05495)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================