Metamenu

Effective results for Tetragenococcus halophilus NBRC 12172 (eggnog40)

Summary

Number of putative secreted proteins: 77
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 77 proteins (2 high, 75 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
945021.TEH_21510(PF00078)mitochondrial
945021.TEH_05830(PF01712)(mitochondrial)
945021.TEH_23800(PF00939)ER
945021.TEH_03280(PF00939)ER
945021.TEH_11820(PF00939)ER
945021.TEH_18230PF08611ER
945021.TEH_23790(PF00939)ER
945021.TEH_24800(PF00078)mitochondrial
945021.TEH_24010(PF00939)(ER)
945021.TEH_19370(PF01712)(mitochondrial)
945021.TEH_02610(PF14330)(mitochondrial)
945021.TEH_19420(PF01712)(mitochondrial)
945021.TEH_01910(PF02403)
945021.TEH_09480(PF00078)
945021.TEH_06110(PF00359)
945021.TEH_11390(PF00078)
945021.TEH_04510(PF01791)
945021.TEH_04280(PF00359)
945021.TEH_25210(PF02403)
945021.TEH_20910(PF00359)
945021.TEH_10920(PF00359)
945021.TEH_06130(PF00359)
945021.TEH_23460(PF00078)
945021.TEH_20610(PF00078)
945021.TEH_05440(PF01791)
945021.TEH_24940(PF01791)
945021.TEH_11690(PF01791)
945021.TEH_23010(PF01791)
945021.TEH_25150(PF00834)
945021.TEH_06150(PF00834)
945021.TEH_12320(PF01813)not used
945021.TEH_18860(PF00359)
945021.TEH_11680(PF00359)
945021.TEH_04480(PF02502)
945021.TEH_07770(PF00078)
945021.TEH_23240(PF00078)
945021.TEH_04550(PF06414)
945021.TEH_01010(PF00359)
945021.TEH_14900(PF05014)
945021.TEH_02930(PF01813)
945021.TEH_24960(PF02502)
945021.TEH_24140(PF01791)
945021.TEH_01020(PF00359)
945021.TEH_24970(PF02502)
945021.TEH_09610(PF00078)
945021.TEH_05060(PF00078)
945021.TEH_02880(PF01991)
945021.TEH_24980(PF00359)
945021.TEH_21600(PF00078)
945021.TEH_24180(PF02502)
945021.TEH_20510(PF06414)
945021.TEH_11480(PF00359)
945021.TEH_12360(PF00078)
945021.TEH_00830(PF00078)
945021.TEH_24170(PF02502)
945021.TEH_24190(PF00359)
945021.TEH_02190(PF01712)not used
945021.TEH_04470(PF02502)
945021.TEH_20660(PF00834)
945021.TEH_03320(PF00359)
945021.TEH_04460(PF00359)
945021.TEH_03140(PF06414)
945021.TEH_20830(PF00359)
945021.TEH_10710(PF00078)
945021.TEH_14720(PF00359)
945021.TEH_17670(PF00078)
945021.TEH_19410(PF05014)
945021.TEH_11630(PF01791)
945021.TEH_03310(PF00359)
945021.TEH_05490(PF00078)
945021.TEH_16390(PF00078)
945021.TEH_24020(PF00078)
945021.TEH_19980PF04733
945021.TEH_12730(PF00078)
945021.TEH_25300(PF00078)
945021.TEH_19360(PF05014)
945021.TEH_11540(PF00359)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================