Effective results for Ornithinibacillus scapharcae TW25 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 26 proteins (1 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
981383.OTW25_010100008879				(PF13367)	ER
981383.OTW25_010100002310				(PF03959)	ER
981383.OTW25_010100005225				(PF13367)	(ER)
981383.OTW25_010100009724				PF00609	(mitochondrial)
981383.OTW25_010100005917				(PF02681)	(ER)
981383.OTW25_010100010284				(PF03851)	(ER)
981383.OTW25_010100010289				(PF03851)	(ER)
981383.OTW25_010100001310				(PF01154) (PF08540)
981383.OTW25_010100015576				(PF01154) (PF08540)
981383.OTW25_010100016185				(PF12606)	ER; not used
981383.OTW25_010100006587				(PF03596)
981383.OTW25_010100010949				(PF03984)
981383.OTW25_010100006377				(PF16804)
981383.OTW25_010100007499				(PF12638)
981383.OTW25_010100019358				(PF08761)
981383.OTW25_010100019353				(PF08761)
981383.OTW25_010100004940				(PF13427)
981383.OTW25_010100003019				(PF13367)
981383.OTW25_010100013186				(PF03417)
981383.OTW25_010100009794				(PF05495)
981383.OTW25_010100011994				(PF03630)
981383.OTW25_010100014991				(PF03417)
981383.OTW25_010100015636				(PF13427)
981383.OTW25_010100013306				(PF03596)
981383.OTW25_010100009779				(PF03417)
981383.OTW25_010100006917				(PF02681)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================