Metamenu

Effective results for Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (eggnog40)

Summary

Number of putative secreted proteins: 671
- Predicted by EffectiveT3: 172 (high confidence), 243 (low confidence)
- Predicted by EffectiveCCBD: 29 within, 25 before, 53 behind expected region 25..70aa
- Predicted by T4SEpre: 107
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 96 proteins (8 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
99287.STM3658+(ER)
99287.STM4281(PF16327) (PF03918)ER
99287.STM2086+(mitochondrial)
99287.STM0425+(mitochondrial)
99287.STM2469(PF10662)(mitochondrial)
99287.STM4003+(mitochondrial)
99287.STM3022(PF03222)(ER)
99287.STM3027(PF00345)ER
99287.STM3028(PF00577)ER
99287.STM3577+ER
99287.STM2884++(plastid)
99287.STM0225(>)ER
99287.STM1779+(ER)
99287.STM2214+(ER); ER
99287.STM4114(PF01228)(mitochondrial)
99287.STM4594(PF00345)(ER)
99287.STM4593(PF00577)ER; (ER)
99287.STM1509+(mitochondrial)
99287.STM2196(>)(PF03313) (PF03315)
99287.STM3825(<)ER
99287.STM2066++(mitochondrial)
99287.STM3624+ER; (ER)
99287.STM0748+ER
99287.STM0022(PF00345)ER
99287.STM0023(PF00577)mitochondrial; (mitochondrial)
99287.STM3555(>)ER
99287.STM1978+(ER)
99287.STM4271(>)mitochondrial
99287.STM0376(>)ER
99287.STM1401+ER
99287.STM3834+(ER); ER
99287.STM2056(PF10662)mitochondrial
99287.STM3499(>)ER
99287.STM1679+ER
99287.STM2515+ER
99287.STM1561(PF06884)ER
99287.STM0301(PF00577)ER
99287.STM1634(>)ER
99287.STM4258(>)ER
99287.STM4098PF05935ER
99287.STM0176(PF00345)ER
99287.STM0175(PF00577)mitochondrial; (mitochondrial)
99287.STM1313+ER; (ER)
99287.STM3714+(ER)
99287.STM1559(>)(mitochondrial)
99287.STM3974+ER
99287.STM1131+ER
99287.STM3811+(mitochondrial)
99287.STM3812(PF03918)ER
99287.STM3814(PF16327)ER
99287.STM1478+ER
99287.STM1044(PF00080)ER
99287.STM2762+(ER)
99287.STM3142(>)ER
99287.STM3146(<)(ER)
99287.STM4533+ER
99287.STM1880++(plastid)
99287.STM0092(<)ER
99287.STM0546(PF00577)(ER)
99287.STM0545(PF00345)ER
99287.STM0098+ER
99287.STM1544(PF10142)ER
99287.STM0897+mitochondrial; plastid
99287.STM2150(PF00577)ER
99287.STM2151(PF00345)ER
99287.STM4537(>)ER
99287.STM0157+ER
99287.STM0338(PF00577)ER
99287.STM0339(PF00345)ER
99287.STM2971(PF03313) (PF03315)(plastid)
99287.STM0336(PF00345)ER
99287.STM1844(>)ER
99287.STM1440(PF00080)ER
99287.STM1937(PF03222)ER
99287.STM2256+(ER)
99287.STM3636+ER
99287.STM3639(PF00345)ER
99287.STM3692+(ER)
99287.STM2747+(mitochondrial)
99287.STM0356+(mitochondrial); (plastid)
99287.STM3349(>)ER
99287.STM0522(>)ER
99287.STM1586+(mitochondrial)
99287.STM3980PF05935ER
99287.STM2176(>)(mitochondrial)
99287.STM2755(PF00215)(ER)
99287.STM3757(>)ER
99287.STM3758+ER
99287.STM3240(PF03313) (PF03315)(plastid)
99287.STM4364+ER
99287.STM0346+ER
99287.STM0196(PF00577)ER
99287.STM0197(PF00345)ER
99287.STM0622(>)mitochondrial; (mitochondrial)
99287.STM1481+ER
99287.STM4571+ER
99287.STM1716(<)ER; (ER)
99287.STM4572(PF00577)ER
99287.STM4573(PF00345)ER
99287.STM3030+ER
99287.STM0275.s+ER
99287.STM1670+ER
99287.STM1494(>)ER
99287.STM1055+(mitochondrial)
99287.STM0280+ER
99287.STM2443+ER
99287.STM1242+ER
99287.STM0465(>)ER
99287.STM3279(PF03222)(ER); plastid
99287.STM0706(>)ER
99287.STM0924(PF00080)ER
99287.STM1033(>)(mitochondrial)
99287.STM1819+ER
99287.STM1359(>)(ER)
99287.STM2126+ER
99287.STM3663+ER
99287.STM2249(PF16327)ER
99287.STM2247(PF03918)ER
99287.STM4502+(mitochondrial)
99287.STM0808(PF01027)(ER); (mitochondrial)
99287.STM0247+mitochondrial
99287.STM3728+(mitochondrial)
99287.STM1826(PF03313) (PF03315)(plastid)
99287.STM1115+ER
99287.STM2091(>)(mitochondrial)
99287.STM3459+(mitochondrial); mitochondrial
99287.STM3006(<)(ER)
99287.STM3293+ER
99287.STM2878(PF00102)(mitochondrial)
99287.STM0234(PF01276) (PF03711)
99287.STM1524+plastid
99287.STM2645(+)ER
99287.STM3605(+)(mitochondrial)
99287.STM2260++
99287.STM2261(+)(mitochondrial)
99287.STM2512+(mitochondrial)
99287.STM3114(PF01276) (PF03711)
99287.STM4581(>)(mitochondrial)
99287.STM2673++
99287.STM0032+PF05935
99287.STM0038+PF05935
99287.STM0363+(plastid)
99287.STM3625+(PF03222)
99287.STM3009(+)(ER)
99287.STM4300(PF05683) (PF05681)
99287.STM1089+plastid
99287.STM1087(+)mitochondrial; (mitochondrial)
99287.STM1405+(>)
99287.STM4382++
99287.STM3638(PF00577)(mitochondrial)
99287.STM3545+mitochondrial
99287.STM2867+(<)
99287.STM4315+(>)
99287.STM1961++
99287.STM1969+(plastid)
99287.STM0300+(PF00345)plastid
99287.STM0304(<)(mitochondrial)
99287.STM1145(+)ER; (ER)
99287.STM2228(+)(ER)
99287.STM2559(PF01276) (PF03711)
99287.STM1319(+)mitochondrial; (mitochondrial)
99287.STM0778++
99287.STM1959+plastid
99287.STM2366+(mitochondrial)
99287.STM2230.1c+(>)
99287.STM1430+(mitochondrial)
99287.STM3684+(mitochondrial)
99287.STM2771+plastid
99287.STM0428+(mitochondrial)
99287.STM3187(+)mitochondrial; (mitochondrial)
99287.STM4351(+)mitochondrial; (mitochondrial)
99287.STM1328(+)ER; (ER)
99287.STM4296(PF01276) (PF03711)
99287.STM4363++
99287.STM0294.1N+(>)
99287.STM0531(+)(mitochondrial)
99287.STM1468(PF05683) (PF05681)
99287.STM1918+plastid
99287.STM3691(+)mitochondrial; (mitochondrial)
99287.STM3417+(mitochondrial)
99287.STM1707+(PF00215)
99287.STM1663+(ER)
99287.STM3243+(PF03222)
99287.STM3464+(>)
99287.STM1239++
99287.STM1398++
99287.STM4390+(mitochondrial)
99287.STM2810+(>)
99287.STM0701(PF01276) (PF03711)
99287.STM0709(>)(mitochondrial)
99287.STM0928+PF13859
99287.STM2897+(plastid)
99287.STM4341+(mitochondrial)
99287.STM1664+(>)
99287.STM2893+(mitochondrial)
99287.STM4423+(>)
99287.STM1835+
99287.STM3925+
99287.STM0235(>)
99287.STM3370+
99287.STM0654+
99287.STM3904+
99287.STM2646(PF01228)
99287.STM3609+
99287.STM3604+
99287.STM2269(+)(ER)
99287.STM4038+
99287.STM4074+
99287.STM3338+
99287.STM4106+
99287.STM2882+
99287.STM2883+
99287.STM2886(PF07720)
99287.STM0137(<)
99287.STM1190+
99287.STM0736+
99287.STM2865+
99287.STM2862+
99287.STM1513(PF10685)
99287.STM4558+
99287.STM1179+
99287.STM1178+
99287.STM1176+
99287.STM1172+
99287.STM2675+
99287.STM2074+
99287.STM2694+
99287.STM2521+
99287.STM4453+
99287.STM0831(+)(mitochondrial)
99287.STM1183+
99287.STM1184+
99287.STM1617(PF00834)
99287.STM0214+
99287.STM0212+
99287.STM0589+
99287.STM0584+
99287.STM0368+
99287.STM0367+
99287.STM3135+
99287.STM3139(PF03738)
99287.STM1763(<)
99287.STM2194+
99287.STM2195+
99287.STM3824(>)
99287.STM2068+
99287.STM2858+
99287.STM0775+
99287.STM3628+
99287.STM3483(PF00834)
99287.STM3484+
99287.STM3008(+)+
99287.STM3550(>)
99287.STM0027(PF00345)
99287.STM4193+
99287.STM3041c+
99287.STM0973(PF01228)
99287.STM1085(PF01027)
99287.STM2959(PF02595)
99287.STM0370(<)
99287.STM0372+
99287.STM4275+
99287.STM1404+
99287.STM1400+
99287.STM1408+
99287.STM1154+
99287.STM2053(>)
99287.STM2051+
99287.STM2050+
99287.STM2233+
99287.STM2543(>)
99287.STM3018+
99287.STM4040+
99287.STM4044(<)
99287.STM4268+
99287.STM4002+
99287.STM4318(<)
99287.STM4312+
99287.STM0408(>)
99287.STM1362+
99287.STM0762(PF05681)
99287.STM0761(PF05683)
99287.STM0957+
99287.STM0568+
99287.STM0785+
99287.STM1142(+)(ER)
99287.STM0940+
99287.STM3804(>)
99287.STM3800(>)
99287.STM2220(+)(mitochondrial)
99287.STM2557+
99287.STM1272+
99287.STM3159(>)
99287.STM1271+
99287.STM3232+
99287.STM2310+
99287.STM0203+
99287.STM4523+
99287.STM4090+
99287.STM1974+
99287.STM0984(+)+
99287.STM1318+
99287.STM0574+
99287.STM3716(PF06176)
99287.STM4420+
99287.STM1555+
99287.STM1578(<)
99287.STM1971+
99287.STM2492(+)(PF02595)
99287.STM2365+
99287.STM4243(+)(ER)
99287.STM4080(PF00834)
99287.STM0143+
99287.STM0017+
99287.STM0322(>)
99287.STM4019+
99287.STM3967+
99287.STM1121(PF10685)not used
99287.STM2241(+)(plastid)
99287.STM4252+
99287.STM2799+
99287.STM3179(+)(mitochondrial)
99287.STM3772+
99287.STM2629(<)
99287.STM3191PF05935
99287.STM3192PF05935
99287.STM1804.S+
99287.STM0913(+)plastid
99287.STM3518(PF05189)
99287.STM3355(PF05681)
99287.STM1701+
99287.STM0084+
99287.STM0089+
99287.STM2970+
99287.STM1209+
99287.STM1008.S+
99287.STM1848(+)(plastid)
99287.STM1595+
99287.STM1855(+)+
99287.STM0423+
99287.STM2019(>)
99287.STM2237+
99287.STM1062+
99287.STM2962+
99287.STM3696+
99287.STM2742(+)(<)
99287.STM2746+
99287.STM3188(PF03738)
99287.STM4236+
99287.STM2429+
99287.STM2583(>)
99287.STM3238(PF03313)
99287.STM2633.S+
99287.STM0525(PF02595)
99287.STM1698A+not used
99287.STM1850+
99287.STM0856(+)(plastid)
99287.STM3981PF05935
99287.STM1102+
99287.STM1107+
99287.STM1922+
99287.STM3301+
99287.STM2005+
99287.STM1071+
99287.STM2178+
99287.STM0491+
99287.STM2597(+)(ER)
99287.STM2592+
99287.STM3247(PF02595)
99287.STM1267+
99287.STM0843(PF01228)
99287.STM1467(+)(<)
99287.STM0441+
99287.STM1669(+)(mitochondrial)
99287.STM1022+
99287.STM3217+
99287.STM2721+
99287.STM2727+
99287.STM2616+
99287.STM4570+
99287.STM1588+
99287.STM4376(PF03738)
99287.STM4377+
99287.STM1534(+)(ER)
99287.STM0292+
99287.STM0042+
99287.STM0504+
99287.STM2090+
99287.STM0650+
99287.STM0616+
99287.STM0619+
99287.STM0882+
99287.STM0274+
99287.STM0791+
99287.STM1011(<)
99287.STM1870+
99287.STM2456(>)
99287.STM3241(PF01228)
99287.STM2604+
99287.STM3089+
99287.STM4566+
99287.STM1806(<)
99287.STM3469+
99287.STM4386(PF00215)
99287.STM4147(<)
99287.STM0865+
99287.STM2718+
99287.STM0289+
99287.STM0048+
99287.STM2938+
99287.STM2445(>)
99287.STM0264+
99287.STM1023(<)
99287.STM4201(>)
99287.STM3720+
99287.STM3098+
99287.STM2707+
99287.STM0321(>)
99287.STM2371+
99287.STM0071+
99287.STM1417(>)
99287.STM0259+
99287.STM0537+
99287.STM1038+
99287.STM1892.S(+)(plastid)
99287.STM3346+
99287.STM2139+
99287.STM1728(PF10685)
99287.STM0440+
99287.STM2399(+)(mitochondrial)
99287.STM3866(<)
99287.STM3863(PF01027)
99287.STM3662+
99287.STM4012(>)
99287.STM1266(+)plastid
99287.STM4506+
99287.STM1341+
99287.STM3287(<)
99287.STM1619+
99287.STM4481+
99287.STM3322+
99287.STM0068+
99287.STM1682+
99287.STM0190+
99287.STM4221+
99287.STM0802(<)
99287.STM0800+
99287.STM0807(PF01027)
99287.STM0483+
99287.STM0936(+)(plastid)
99287.STM3025.1N+
99287.STM4435+
99287.STM3354(PF05683)
99287.STM3912(>)
99287.STM2655(PF14328)
99287.STM0159(<)
99287.STM2452(+)+
99287.STM3675(PF00215)
99287.STM3385+
99287.STM2270+
99287.STM4489+
99287.STM3334+
99287.STM3297+
99287.STM4421+
99287.STM0458+
99287.STM3250+
99287.STM2875(+)
99287.STM2874(+)
99287.STM1631(+)
99287.STM0902(+)
99287.STM4580.S(+)
99287.STM1743(+)
99287.STM3059.S(+)
99287.STM2462(+)
99287.STM2467(+)
99287.STM3596(+)
99287.STM3025(+)
99287.STM4036(+)
99287.STM3110(+)
99287.STM4105(+)
99287.STM4583(+)
99287.STM2885(+)
99287.STM4211(+)
99287.STM3201(+)
99287.STM0131(+)
99287.STM1605(+)
99287.STM0739(+)
99287.STM1510(+)
99287.STM0825(+)
99287.STM3853(+)
99287.STM2525(+)
99287.STM2524(+)
99287.STM2459(+)
99287.STM2326(+)
99287.STM0838(+)
99287.STM2985(+)
99287.STM0100(+)
99287.STM0109(+)
99287.STM2859(+)
99287.STM0698(+)
99287.STM2954.1n(+)
99287.STM2440(+)
99287.STM2446(+)
99287.STM2665(+)
99287.STM2530(+)
99287.STM3136(+)
99287.STM3316(+)
99287.STM4474(+)
99287.STM0689(+)
99287.STM0599(+)
99287.STM0597(+)
99287.STM0970(+)
99287.STM1088(+)
99287.STM1082(+)
99287.STM0378(+)
99287.STM1791(+)
99287.STM1790(+)
99287.STM3124(+)
99287.STM3120(+)
99287.STM3122(+)
99287.STM3123(+)
99287.STM2868(+)
99287.STM3542(+)
99287.STM4045(+)
99287.STM0389(+)
99287.STM4261(+)
99287.STM1427(+)
99287.STM0057(+)
99287.STM0789(+)
99287.STM1960(+)
99287.STM1092(+)not used
99287.STM1091(+)
99287.STM1569(+)
99287.STM2945(+)
99287.STM1787(+)
99287.STM3803(+)
99287.STM2044(+)
99287.STM3236(+)
99287.STM3155(+)
99287.STM3157(+)
99287.STM3796(+)
99287.STM3795(+)
99287.STM4411(+)
99287.STM3332+
99287.STM4524(+)
99287.STM1315(+)
99287.STM0793(+)
99287.STM1554(+)
99287.STM0316(+)
99287.STM0318(+)
99287.STM3451(+)
99287.STM3979(+)
99287.STM1136(+)
99287.STM0401(+)
99287.STM2033(+)
99287.STM2036(+)
99287.STM3785(+)
99287.STM3851.S(+)
99287.STM4084(+)
99287.STM0040(+)
99287.STM0142(+)
99287.STM2637(+)
99287.STM0328.s(+)
99287.STM1877(+)
99287.STM2792(+)
99287.STM3687(+)
99287.STM2772(+)
99287.STM4250(+)
99287.STM2805(+)
99287.STM1849(+)
99287.STM1111(+)
99287.STM1110(+)
99287.STM1858(+)
99287.STM0852(+)
99287.STM3734(+)
99287.STM2167(+)
99287.STM3697(+)
99287.STM2344(+)
99287.STM0925.S(+)
99287.STM3508(+)
99287.STM4519(+)
99287.STM3434(+)
99287.STM4495(+)
99287.STM1326(+)
99287.STM1618(+)
99287.STM2908(+)
99287.STM0634(+)
99287.STM1305(+)
99287.STM0091(+)
99287.STM3532(+)
99287.STM4183(+)
99287.STM4164(+)
99287.STM4161(+)
99287.STM2703(+)
99287.STM0534(+)
99287.STM1541(+)
99287.STM1265(+)
99287.STM1264(+)
99287.STM1545(+)
99287.STM0894(+)
99287.STM1004(+)
99287.STM2723(+)
99287.STM2209.1c(+)
99287.STM3747(+)
99287.STM3529(+)
99287.STM4578(+)
99287.STM3415(+)
99287.STM4199(+)
99287.STM0711(+)
99287.STM1288(+)
99287.STM1949(+)
99287.STM0041(+)
99287.STM1901(+)
99287.STM1673(+)not used
99287.STM0271(+)
99287.STM3239(+)
99287.STM1012(+)
99287.STM1014(+)
99287.STM2286(+)
99287.STM2287(+)
99287.STM1706(+)
99287.STM1703(+)
99287.STM4297(+)
99287.STM2605(+)
99287.STM3644(+)
99287.STM3263(+)
99287.STM2806(+)
99287.STM0281(+)
99287.STM0282(+)
99287.STM4029(+)
99287.STM3700(+)
99287.STM2934(+)
99287.STM0603(+)
99287.STM0715(+)not used
99287.STM2710(+)
99287.STM4203(+)
99287.STM1349(+)
99287.STM1640(+)
99287.STM0261(+)
99287.STM2701(+)
99287.STM2413(+)
99287.STM3099(+)
99287.STM2702(+)
99287.STM4157(+)
99287.STM2375(+)
99287.STM0076(+)
99287.STM1411(+)
99287.STM1655(+)
99287.STM0921(+)
99287.STM1030(+)
99287.STM1814(+)
99287.STM2628(+)
99287.STM2398(+)
99287.STM3867(+)
99287.STM2626(+)
99287.STM3049(+)
99287.STM3283(+)
99287.STM0621(+)
99287.STM0391(+)
99287.STM0803(+)
99287.STM1624(+)
99287.STM0937(+)
99287.STM1533(+)
99287.STM4473(+)
99287.STM2477(+)
99287.STM3871(+)
99287.STM0447(+)
99287.STM4001(+)
99287.STM3586.S(+)
99287.STM0019(+)
99287.STM0018(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.0 (20/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================