Effective results for Desmospora sp. 8437 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 30 proteins (11 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
997346.HMPREF9374_3158				(PF09683)	mitochondrial; (mitochondrial)
997346.HMPREF9374_0505				(PF13176)	(ER); ER
997346.HMPREF9374_0625				PF03133	(mitochondrial)
997346.HMPREF9374_3413				PF00688	ER
997346.HMPREF9374_1773				(PF12862) (PF13176)
997346.HMPREF9374_2046				(PF13176)
997346.HMPREF9374_0166				(PF13906)
997346.HMPREF9374_1775				(PF13176)
997346.HMPREF9374_1846				PF06905
997346.HMPREF9374_2071				PF06905
997346.HMPREF9374_0403				(PF15588)
997346.HMPREF9374_1912				(PF13176)
997346.HMPREF9374_3281				(PF13176)
997346.HMPREF9374_3512				(PF13176)
997346.HMPREF9374_1844				(PF06792)
997346.HMPREF9374_1135				(PF00847)
997346.HMPREF9374_2758				PF04893
997346.HMPREF9374_2757				PF04893
997346.HMPREF9374_2294				(PF06792)
997346.HMPREF9374_2741				PF04893
997346.HMPREF9374_2742				PF04893
997346.HMPREF9374_3227				PF04893
997346.HMPREF9374_2578				(PF13921)
997346.HMPREF9374_1050				(PF13921)
997346.HMPREF9374_0631				(PF06838)
997346.HMPREF9374_0630				(PF06838)	not used
997346.HMPREF9374_2843				(PF05495)
997346.HMPREF9374_1838				(PF13921)
997346.HMPREF9374_2783				PF04893
997346.HMPREF9374_1552				PF04893

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================