Effective results for Pseudohaliea rubra DSM 19751 (refseq)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 27 proteins (5 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_052094384.1				PF09139	(ER)
WP_035514901.1				(PF00685)	ER
WP_052094604.1				(PF03209)	mitochondrial
WP_052094383.1				PF06258	(ER)
WP_035515995.1				(PF00209)	(mitochondrial)
WP_035514903.1				(PF00685)	(mitochondrial)
WP_035514874.1				(PF03283)	mitochondrial
WP_052094453.1				(PF00209)	ER
WP_035516587.1				(PF03209)	ER
WP_035518106.1				(PF03283)	ER
WP_035516070.1				(PF00209)	(ER)
WP_035517538.1				(PF12973)
WP_052094264.1				(PF10504)
WP_052094381.1				PF06258
WP_052094505.1				PF06258
WP_035515545.1				(PF12973)
WP_035514736.1				(PF00209)
WP_035516163.1				(PF03982)
WP_035513624.1				(PF00209)
WP_035514891.1				PF06258
WP_035513770.1				(PF14336)
WP_035514899.1				(PF00685)
WP_052094256.1				(PF11815)
WP_052094263.1				(PF12973)
WP_035517542.1				(PF12973)
WP_035517950.1				(PF12973)
WP_035516609.1				(PF00685)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================