Effective results for Aquabacterium sp. NJ1 (refseq)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 49 proteins (11 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_052162070.1				(PF17186)	mitochondrial
WP_035035886.1				(PF01852)	ER
WP_035039850.1				(PF00657)	ER
WP_052162567.1				(PF05023)	ER
WP_052162503.1				PF03283	ER
WP_052162178.1				(PF00657)	ER
WP_035039920.1				(PF00487)	ER
WP_052162782.1				PF16036	ER
WP_052162210.1				(PF00487)	ER
WP_052162298.1				PF03283	(mitochondrial)
WP_035037600.1				PF16036	ER
WP_035037817.1				(PF01852)	(ER); ER
WP_035034876.1				PF16036	ER
WP_052162196.1				PF03283	ER
WP_035041578.1				(PF01564)	ER
WP_035037855.1				PF16036	ER
WP_035034643.1				PF16036	ER
WP_035038148.1				PF16036	(mitochondrial)
WP_052162237.1				(PF00657)	(mitochondrial)
WP_035037665.1				(PF17048)	ER
WP_035039806.1				(PF02458)	(mitochondrial)
WP_035037593.1				(PF17186)	(mitochondrial)
WP_035038156.1				(PF12740)	(ER)
WP_052162799.1				(PF01564)	(mitochondrial)
WP_035038643.1				PF07647	(ER)
WP_035038935.1				(PF00657)	(ER)
WP_035035905.1				(PF00487)	(ER)
WP_052162994.1				(PF00487)	(ER)
WP_035034440.1				(PF00487)
WP_035041671.1				(PF00487)
WP_035035246.1				(PF01564)
WP_035041395.1				(PF01564)
WP_035036921.1				(PF00487)
WP_052162214.1				(PF00487)
WP_035038057.1				(PF12740)
WP_035039315.1				(PF12471)
WP_035039317.1				(PF07958)
WP_052162657.1				(PF00487)
WP_035038163.1				(PF01564)
WP_035039455.1				(PF09791)
WP_035039424.1				(PF00487)
WP_035039833.1				(PF00487)
WP_052162215.1				(PF00487)
WP_052162924.1				(PF00487)
WP_035037628.1				(PF08695)
WP_052162213.1				(PF00487)
WP_035042463.1				(PF09791)
WP_035038824.1				PF16036
WP_035036089.1				(PF00487)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 4.125 (33/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================