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Genomes encoding eukaryotic-like proteins

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PF00018 SH3 domain

Copy number in non-pathogens:
Mean=0.00 Stddev=0.05

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Paraliobacillus ryukyuensis s 20 1
Xanthomonas translucens pv. graminis ART-Xtg29 s 20 1
[Clostridium asparagiforme] DSM 15981 s 20 1
Prevotella salivae DSM 15606 s 20 1
Frankia sp. CN3 s 20 1
Prevotella salivae F0493 s 20 1
Xanthomonas translucens pv. graminis ART-Xtg29 s 20 1
Xanthomonas sp. SHU166 s 20 1
Xanthomonas sp. SHU199 s 20 1
Xanthomonas sp. SHU308 s 20 1
Xanthomonas sacchari NCPPB 4393 s 20 1
Enterobacter sp. R4-368 s 20 1
Riemerella anatipestifer s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Endozoicomonas numazuensis s 20 1
Pontibacillus litoralis JSM 072002 s 20 1
Listeria monocytogenes s 20 1
Thalassomonas viridans s 20 1
Kosakonia oryzae s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Listeria monocytogenes s 20 1
Streptomyces silaceus s 20 1
Riemerella anatipestifer s 20 1
Riemerella anatipestifer s 20 1
Listeria monocytogenes s 20 1
Listeria ivanovii s 20 1

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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