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Genomes encoding eukaryotic-like proteins

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PF01229 Glycosyl hydrolases family 39

Copy number in non-pathogens:
Mean=0.18 Stddev=0.61

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Herbidospora cretacea s 4 3
Haloferula sp. BvORR071 s 4 3
Roseburia faecis s 4 3
Marvinbryantia formatexigens DSM 14469 s 4 3
Xylanimonas cellulosilytica DSM 15894 s 4 3
Clostridium sp. ASF502 s 12 8
Didymococcus colitermitum TAV2 s 14 9
Opitutaceae bacterium TAV1 s 11 7
Photorhabdus temperata subsp. temperata Meg1 s 4 3
Clostridium sp. KLE 1755 s 4 3
Eubacterium ramulus ATCC 29099 s 4 3
Dyadobacter beijingensis DSM 21582 s 4 3
Clostridiales bacterium NK3B98 s 7 5
Clostridium sp. D5 s 7 5
Lachnospiraceae bacterium 1_4_56FAA s 9 6
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 9 6
Photorhabdus temperata J3 s 4 3
Commensalibacter intestini A911 s 7 5
Hungatella hathewayi 12489931 s 7 5
[Clostridium] aerotolerans DSM 5434 s 4 3
Enterococcus avium s 4 3
Eisenbergiella tayi s 11 7
Eisenbergiella tayi s 9 6
Eisenbergiella tayi s 9 6
Eisenbergiella tayi s 7 5
Eisenbergiella tayi s 7 5
Eisenbergiella tayi s 9 6
Eisenbergiella tayi s 9 6
Paenibacillus odorifer s 4 3
Paenibacillus odorifer s 4 3
Eisenbergiella tayi s 9 6

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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